Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.5e-278 961.4 478 100.0
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 1.3e-258 896.0 479 92.9
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.7e-258 894.4 479 92.5
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.8e-231 805.8 478 81.4
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 3.3e-230 801.6 478 80.8
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 8.1e-229 797.0 477 80.7
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 8.1e-229 797.0 477 80.7
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.3e-226 789.6 479 80.4
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.7e-226 789.3 505 76.6
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 4.9e-226 787.7 481 80.2
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.1e-224 782.3 415 92.8
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.0e-223 780.0 479 77.7
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 1.1e-222 776.5 490 78.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 7.4e-222 773.9 479 79.5
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.1e-220 768.5 479 78.3
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.2e-219 766.5 479 77.5
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.5e-219 766.1 478 75.5
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 6.5e-218 760.8 479 78.9
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.1e-217 760.0 484 76.9
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.4e-217 759.6 479 76.6
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 7.1e-217 757.3 480 76.0
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.6e-216 756.1 479 78.5
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 2.1e-216 755.7 479 75.6
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 7.9e-216 753.8 479 78.3
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.0e-215 753.4 481 74.4
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.3e-215 753.1 483 77.2
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.3e-215 753.1 483 76.8
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 1.8e-215 752.7 484 75.6
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.0e-215 751.9 479 76.0
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.0e-215 751.9 485 76.1
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.9e-215 751.5 483 75.4
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 6.7e-215 750.7 483 75.2
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 8.7e-215 750.4 480 75.8
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 4.3e-214 748.0 496 74.0
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 7.4e-214 747.3 479 74.9
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 2.2e-213 745.7 483 76.0
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.2e-213 745.7 483 74.9
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.8e-213 745.3 483 76.6
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.8e-213 744.6 478 74.9
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 2.4e-212 742.3 479 74.7
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.4e-212 742.3 479 74.7
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 3.1e-212 741.9 483 74.7
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 6.9e-212 740.7 479 74.1
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 5.9e-211 737.6 475 74.7
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 7.7e-211 737.3 484 72.9
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 7.7e-211 737.3 480 74.2
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.7e-210 736.1 483 74.3
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 2.2e-210 735.7 479 74.7
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.9e-209 732.6 482 73.4
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 3.2e-209 731.9 483 74.1
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.6e-208 728.4 480 73.5
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 7.9e-208 727.2 478 73.4
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 3.9e-207 724.9 478 73.6
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 5.1e-207 724.5 516 69.6
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.5e-206 723.0 480 72.5
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.0e-206 722.6 484 73.1
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.0e-206 722.6 484 73.6
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 2.5e-206 722.2 479 72.7
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 4.3e-206 721.5 480 71.9
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 4.3e-206 721.5 480 73.1
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.3e-205 719.9 479 72.2
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 2.2e-205 719.2 478 72.2
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 4.8e-205 718.0 478 72.6
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.1e-204 716.8 478 72.2
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.8e-204 716.1 432 78.7
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 3.1e-204 715.3 481 71.7
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 3.1e-204 715.3 479 71.8
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 9.1e-204 713.8 478 74.1
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 2.6e-203 712.2 493 71.8
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 4.5e-203 711.4 481 73.2
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.7e-202 709.5 479 71.2
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 6.5e-202 707.6 479 71.0
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 6.5e-202 707.6 478 72.0
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 1.4e-201 706.4 478 71.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 9.4e-201 703.7 481 69.9
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 9.4e-201 703.7 480 71.0
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 2.1e-200 702.6 478 72.8
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.7e-200 702.2 488 70.9
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 2.7e-200 702.2 484 71.3
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.0e-199 700.3 498 68.3
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 3.0e-199 698.7 454 75.1
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 5.1e-199 698.0 479 69.9
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 6.7e-199 697.6 488 72.1
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 8.8e-199 697.2 507 66.9
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.5e-198 696.4 480 70.4
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.1e-196 690.3 480 69.4
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.4e-196 689.9 480 69.6
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 4.1e-196 688.3 480 69.4
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.5e-195 686.4 487 70.8
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 2.0e-195 686.0 480 69.4
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 2.0e-195 686.0 480 69.4
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 2.0e-195 686.0 480 68.8
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 5.9e-195 684.5 569 61.3
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.0e-194 683.7 478 69.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 6.5e-194 681.0 478 69.2
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 5.5e-193 677.9 504 66.3
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.1e-192 676.0 481 69.4
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.6e-190 669.1 487 67.6
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 3.1e-188 662.1 432 72.9
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 7.7e-187 657.5 464 70.0
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.0e-186 657.1 429 73.4
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.7e-186 656.4 517 64.4
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 2.9e-186 655.6 497 64.8
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.2e-184 650.2 479 65.1
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 3.0e-183 645.6 480 65.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 8.8e-183 644.0 478 64.4
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.7e-178 629.8 481 65.9
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.4e-175 620.2 418 71.8
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 2.3e-175 619.4 424 73.6
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.3e-173 613.6 558 59.0
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 1.3e-173 613.6 480 63.3
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 2.2e-173 612.8 496 67.1
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.5e-169 599.4 486 60.3
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 6.4e-165 584.7 476 57.8
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 3.0e-162 575.9 490 58.0
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 6.6e-162 574.7 475 59.4
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.6e-158 562.8 413 68.8
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.6e-150 536.2 357 73.9
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.4e-143 513.8 479 56.8
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.5e-105 386.7 597 37.9
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 3.2e-100 369.8 253 66.4
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 8.7e-98 361.7 526 43.0
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 2.5e-92 343.6 254 66.9
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 5.0e-85 319.3 211 76.3
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.6e-83 313.2 182 76.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.9e-77 293.5 210 64.8
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 4.0e-74 283.1 249 57.8
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 2.6e-73 280.4 387 45.2
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.4e-71 273.9 184 80.4
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 3.5e-70 270.0 544 34.6
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.8e-66 257.7 175 68.0
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.2e-60 236.5 265 48.7
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 1.3e-56 224.9 494 33.0
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 9.2e-55 218.8 428 34.3
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 9.5e-52 208.8 171 62.0
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.6e-43 181.4 383 33.4
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 4.0e-42 176.8 212 50.5
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.8e-41 172.9 452 29.2
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.7e-38 164.1 453 27.2
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.7e-32 144.8 215 39.5
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 8.9e-26 122.5 182 47.3
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.6e-25 120.9 65 93.8
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.6e-19 101.7 65 76.9
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 9.9e-17 92.4 65 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.2e-14 85.5 151 34.4
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 3.9e-13 80.5 106 44.3
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 4.3e-12 77.0 69 60.9
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 1.6e-11 75.1 68 60.3
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 5.3e-10 70.1 84 46.4
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.4e-07 62.0 65 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.9e-07 61.6 83 44.6


User provided reference genes

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