Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 6.1e-55 217.2 109 100.0
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.2e-33 145.6 110 70.9
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.8e-30 136.0 109 67.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 4.0e-14 81.6 114 45.6
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.6e-13 79.0 101 44.6
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.6e-13 79.0 101 44.6
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.4e-13 78.6 112 44.6
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.4e-13 78.6 89 47.2
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 7.5e-13 77.4 101 44.6
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 9.8e-13 77.0 112 43.8
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 9.8e-13 77.0 90 47.8
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.9e-12 75.5 118 40.7
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 3.7e-12 75.1 92 47.8
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 6.4e-12 74.3 112 44.6
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 8.3e-12 73.9 96 42.7
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.4e-11 73.2 90 50.0
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.4e-11 73.2 92 45.7
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.9e-11 72.8 104 45.2
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.4e-11 72.4 123 42.3
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.4e-11 72.4 106 45.3
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.2e-11 72.0 93 46.2
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 3.2e-11 72.0 114 40.4
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 4.1e-11 71.6 90 48.9
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.1e-11 71.6 112 45.5
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 5.4e-11 71.2 95 48.4
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 5.4e-11 71.2 112 42.9
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 9.2e-11 70.5 112 42.0
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 9.2e-11 70.5 106 44.3
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.2e-11 70.5 103 43.7
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.2e-11 70.5 112 44.6
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 9.2e-11 70.5 85 47.1
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 9.2e-11 70.5 109 41.3
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 9.2e-11 70.5 94 43.6
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.2e-11 70.5 92 43.5
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.2e-10 70.1 90 40.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.2e-10 70.1 99 40.4
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.2e-10 70.1 90 48.9
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.2e-10 70.1 89 40.4
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-10 69.7 112 44.6
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.6e-10 69.7 92 45.7
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.6e-10 69.7 92 44.6
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.0e-10 69.3 111 43.2
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.0e-10 69.3 102 43.1
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.0e-10 69.3 90 45.6
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.0e-10 69.3 98 39.8
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.0e-10 69.3 94 48.9
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.0e-10 69.3 118 40.7
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 2.7e-10 68.9 85 44.7
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.7e-10 68.9 86 45.3
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.7e-10 68.9 102 43.1
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.7e-10 68.9 94 44.7
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 3.5e-10 68.6 106 39.6
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.5e-10 68.6 89 40.4
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.5e-10 68.6 98 42.9
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.6e-10 68.2 85 47.1
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 4.6e-10 68.2 104 43.3
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 4.6e-10 68.2 106 42.5
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 4.6e-10 68.2 94 42.6
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 6.0e-10 67.8 112 42.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.0e-10 67.8 94 43.6
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.0e-10 67.8 94 43.6
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 6.0e-10 67.8 104 38.5
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 6.0e-10 67.8 104 36.5
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 7.8e-10 67.4 88 39.8
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 7.8e-10 67.4 116 39.7
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 7.8e-10 67.4 85 42.4
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.0e-09 67.0 114 42.1
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.0e-09 67.0 90 42.2
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.0e-09 67.0 87 47.1
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.0e-09 67.0 93 47.3
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.0e-09 67.0 93 47.3
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.3e-09 66.6 99 38.4
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.3e-09 66.6 112 41.1
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-09 66.6 93 44.1
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.7e-09 66.2 87 43.7
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.3e-09 65.9 90 43.3
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.3e-09 65.9 85 45.9
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 2.3e-09 65.9 86 46.5
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.0e-09 65.5 101 38.6
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.0e-09 65.5 97 44.3
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 3.9e-09 65.1 88 42.0
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.9e-09 65.1 113 41.6
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 3.9e-09 65.1 98 42.9
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.9e-09 65.1 110 37.3
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 5.0e-09 64.7 88 44.3
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.0e-09 64.7 96 40.6
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.0e-09 64.7 85 44.7
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 6.6e-09 64.3 92 39.1
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 6.6e-09 64.3 114 42.1
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 6.6e-09 64.3 131 38.2
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 6.6e-09 64.3 81 43.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 6.6e-09 64.3 92 43.5
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.1e-08 63.5 115 38.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.1e-08 63.5 115 38.3
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.1e-08 63.5 100 39.0
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.5e-08 63.2 90 45.6
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.5e-08 63.2 88 40.9
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.9e-08 62.8 81 45.7
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.9e-08 62.8 110 35.5
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.9e-08 62.8 93 46.2
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.3e-08 62.0 104 35.6
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.3e-08 62.0 90 43.3
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 4.3e-08 61.6 97 39.2
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.6e-08 61.2 89 43.8
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 7.3e-08 60.8 104 39.4
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.3e-08 60.8 92 45.7
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 7.3e-08 60.8 99 37.4
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 9.5e-08 60.5 79 43.0
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.2e-07 60.1 99 41.4
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.2e-07 60.1 90 37.8
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.2e-07 60.1 90 37.8
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.2e-07 60.1 117 35.9
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.6e-07 59.7 99 40.4
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.6e-07 59.7 90 42.2
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.6e-07 59.7 92 42.4
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.1e-07 59.3 96 37.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.1e-07 59.3 114 40.4
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.8e-07 58.9 96 40.6
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.8e-07 58.9 91 42.9
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.6e-07 58.5 96 37.5
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 3.6e-07 58.5 87 39.1
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 3.6e-07 58.5 108 38.9
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 6.2e-07 57.8 96 36.5
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 6.2e-07 57.8 96 36.5
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 8.0e-07 57.4 99 39.4
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 8.0e-07 57.4 96 36.5
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.0e-07 57.4 91 40.7
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 8.0e-07 57.4 99 39.4
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.1e-06 57.0 94 39.4
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-06 57.0 90 41.1
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-06 57.0 90 41.1
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.1e-06 57.0 96 36.5
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.1e-06 57.0 101 38.6
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.4e-06 56.6 113 38.9
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.4e-06 56.6 114 39.5
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.8e-06 56.2 93 39.8
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 4.0e-06 55.1 111 37.8
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 4.0e-06 55.1 111 37.8
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 4.0e-06 55.1 111 37.8
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 5.2e-06 54.7 94 43.6
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 8.9e-06 53.9 80 38.8


User provided reference genes

Program Settings