Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0003870 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.2e-233 812.8 414 100.0
Sc14g0004250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.2e-233 812.8 414 100.0
ScUNg0000050 Simmondsia chinensis HOM05D007167 ORTHO05D000922 1.2e-233 812.8 414 100.0
ScUNg0000170 Simmondsia chinensis HOM05D007167 ORTHO05D000922 1.2e-233 812.8 414 100.0
ScUNg0000250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.2e-233 812.8 414 100.0
ScUNg0001330 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.2e-231 806.2 414 99.8
ScUNg0000780 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.1e-202 709.9 401 92.5
Sc14g0004350 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.9e-182 642.1 340 98.2
ScUNg0000310 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.9e-182 642.1 340 98.2
ScUNg0000660 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.9e-182 642.1 340 98.2
ScUNg0000690 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.9e-182 642.1 340 98.2
ScUNg0000730 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.9e-182 642.1 340 98.2
ScUNg0001240 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.9e-182 642.1 340 98.2
ScUNg0001280 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.9e-182 642.1 340 98.2
ScUNg0001370 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.9e-182 642.1 340 98.2
ScUNg0001420 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.9e-182 642.1 340 98.2
ScUNg0000440 Simmondsia chinensis HOM05D013320 ORTHO05D000922 3.8e-182 641.7 357 94.7
Sc14g0003770 Simmondsia chinensis HOM05D007167 ORTHO05D001070 1.1e-181 640.2 333 99.7
Sc14g0003940 Simmondsia chinensis HOM05D007167 ORTHO05D013628 8.3e-145 517.7 258 100.0
ScUNg0000790 Simmondsia chinensis HOM05D007167 ORTHO05D013628 3.2e-120 436.0 235 97.4
ScUNg0000510 Simmondsia chinensis HOM05D007167 ORTHO05D000922 1.7e-97 360.5 244 78.7
Sc18g0006340 Simmondsia chinensis HOM05D007167 ORTHO05D000922 2.9e-81 306.6 252 69.4
Sc14g0003700 Simmondsia chinensis HOM05D007167 ORTHO05D013628 8.7e-78 295.0 142 100.0
Sc14g0004320 Simmondsia chinensis HOM05D007167 ORTHO05D013628 8.7e-78 295.0 142 100.0
ScUNg0001050 Simmondsia chinensis HOM05D007167 ORTHO05D001679 8.7e-78 295.0 142 100.0
ScUNg0000880 Simmondsia chinensis HOM05D007167 ORTHO05D000922 5.7e-69 265.8 161 92.5
ScUNg0000980 Simmondsia chinensis HOM05D007167 ORTHO05D000922 5.7e-69 265.8 161 92.5
ScUNg0001460 Simmondsia chinensis HOM05D007167 ORTHO05D000922 5.7e-69 265.8 161 92.5
ScUNg0000950 Simmondsia chinensis HOM05D007167 ORTHO05D000922 5.5e-56 222.6 268 55.2
ScUNg0001100 Simmondsia chinensis HOM05D007167 ORTHO05D000922 3.4e-50 203.4 99 100.0
Sc14g0003760 Simmondsia chinensis HOM05D007167 ORTHO05D013628 1.2e-42 178.3 84 98.8
Sc02g0009550 Simmondsia chinensis HOM05D007167 ORTHO05D013628 2.0e-42 177.6 83 100.0
Sc14g0004160 Simmondsia chinensis HOM05D007167 ORTHO05D013628 2.0e-42 177.6 83 100.0
Sc14g0004270 Simmondsia chinensis HOM05D007167 ORTHO05D000205 2.0e-42 177.6 83 100.0
Sc18g0006310 Simmondsia chinensis HOM05D007167 ORTHO05D001745 2.0e-42 177.6 83 100.0
ScUNg0001450 Simmondsia chinensis HOM05D007167 ORTHO05D001745 2.0e-42 177.6 94 91.5
Sopen00g007010 Solanum pennellii HOM05D007167 ORTHO05D000922 2.6e-42 177.2 117 76.9
PGSC0003DMG400034963 Solanum tuberosum HOM05D007167 ORTHO05D000922 2.5e-40 170.6 126 72.2
PGSC0003DMG400039430 Solanum tuberosum HOM05D007167 ORTHO05D000922 2.5e-40 170.6 126 72.2
Psat0s1917g0080 Pisum sativum HOM05D001828 ORTHO05D001745 1.5e-37 161.4 101 81.2
ScUNg0001090 Simmondsia chinensis HOM05D007167 ORTHO05D000922 2.2e-33 147.5 94 93.6
PGSC0003DMG400043107 Solanum tuberosum HOM05D007167 ORTHO05D000922 2.5e-32 144.1 106 68.9
Sc21g0003540 Simmondsia chinensis HOM05D007167 ORTHO05D000922 2.0e-29 134.4 96 69.8
ScUNg0001250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 2.8e-28 130.6 60 100.0
Sc12g0000010 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-26 124.4 68 91.2
Sc14g0004040 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-26 124.4 68 91.2
Sc14g0004080 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-26 124.4 68 91.2
Sc14g0004280 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-26 124.4 68 91.2
Sc14g0004310 Simmondsia chinensis HOM05D007167 ORTHO05D001679 2.0e-26 124.4 68 91.2
ScUNg0000500 Simmondsia chinensis HOM05D013320 ORTHO05D001679 2.7e-26 124.0 85 77.6
Atru.chr10.38 Acer truncatum HOM05D007167 ORTHO05D001679 2.5e-24 117.5 66 89.4
A06p25100 Brassica napus HOM05D007167 ORTHO05D000922 4.2e-24 116.7 101 63.4
BNapus_Darmor_BZH_scaffold_107p00080 Brassica napus HOM05D007167 ORTHO05D000922 7.2e-24 115.9 98 64.3
arahy.Tifrunner.gnm1.ann1.ET488V Arachis hypogaea HOM05D007167 ORTHO05D001679 1.6e-23 114.8 57 96.5
Rhsim05G0123600 Rhododendron simsii HOM05D016882 ORTHO05D001745 1.6e-23 114.8 57 96.5
Sc21g0003530 Simmondsia chinensis HOM05D008177 ORTHO05D010128 2.1e-23 114.4 94 61.7
PGSC0003DMG400004552 Solanum tuberosum HOM05D007167 ORTHO05D000922 2.1e-23 114.4 84 69.0
unitig_145.g32368 Utricularia gibba HOM05D007167 ORTHO05D001679 2.1e-23 114.4 57 96.5
unitig_668.g29633 Utricularia gibba HOM05D007167 ORTHO05D001679 2.1e-23 114.4 57 96.5
Lj5g0012521 Lotus japonicus HOM05D007167 ORTHO05D001679 2.8e-23 114.0 66 87.9
Lj5g0016692 Lotus japonicus HOM05D007167 ORTHO05D001679 2.8e-23 114.0 66 87.9
Lj6g0017867 Lotus japonicus HOM05D007167 ORTHO05D001679 2.8e-23 114.0 66 87.9
LjContig00006g0001730 Lotus japonicus HOM05D007167 ORTHO05D001679 2.8e-23 114.0 66 87.9
Medtr0021s0120 Medicago truncatula HOM05D007167 ORTHO05D010211 4.7e-23 113.2 66 86.4
Psat0s8399g0040 Pisum sativum HOM05D007167 ORTHO05D001679 4.7e-23 113.2 66 86.4
EL10Ac5g11394 Beta vulgaris HOM05D007167 ORTHO05D000922 1.4e-22 111.7 58 93.1
EL10Ac5g11395 Beta vulgaris HOM05D007167 ORTHO05D000922 3.0e-22 110.5 64 81.2
Sc02g0009430 Simmondsia chinensis HOM05D007167 ORTHO05D001679 5.2e-22 109.8 51 100.0
CsaV3_UNG240550 Cucumis sativus L. HOM05D007167 ORTHO05D001679 1.5e-21 108.2 106 62.3
EL10Ac2g03014 Beta vulgaris HOM05D007167 ORTHO05D001679 2.0e-21 107.8 61 86.9
LjContig00547g0012562 Lotus japonicus HOM05D007167 ORTHO05D001679 2.6e-21 107.5 53 96.2
A06p26520 Brassica napus HOM05D007167 ORTHO05D000922 7.5e-21 105.9 100 62.0
BNapus_Darmor_BZH_scaffold_107p00200 Brassica napus HOM05D007167 ORTHO05D000922 2.4e-19 100.9 77 71.4
Mapoly4038s0001 Marchantia polymorpha HOM05D007167 ORTHO05D001679 2.4e-19 100.9 57 86.0
unitig_245.g35372 Utricularia gibba HOM05D007167 ORTHO05D001679 3.1e-19 100.5 48 97.9
arahy.Tifrunner.gnm1.ann1.XTZD9Y Arachis hypogaea HOM05D007167 ORTHO05D001679 5.4e-19 99.8 56 87.5
A06p25010 Brassica napus HOM05D007167 ORTHO05D000922 7.0e-19 99.4 101 57.4
Sc06g0002460 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-18 96.7 69 75.4
Lj6g0023052 Lotus japonicus HOM05D005014 ORTHO05D003704 7.8e-18 95.9 54 83.3
EL10Ac4g08190 Beta vulgaris HOM05D007167 ORTHO05D000922 1.3e-17 95.1 49 93.9
ScUNg0000970 Simmondsia chinensis HOM05D007167 ORTHO05D009885 1.9e-16 91.3 69 72.5
Sc07g0005240 Simmondsia chinensis HOM05D007167 ORTHO05D000922 2.5e-16 90.9 67 70.1
Sed0028154 Sechium edule HOM05D007167 ORTHO05D001679 3.3e-16 90.5 58 81.0
EL10As19g24181 Beta vulgaris HOM05D007167 ORTHO05D001679 5.6e-16 89.7 50 88.0
SHI39841 Sapria himalayana HOM05D015261 ORTHO05D001679 1.2e-15 88.6 306 35.0
SHI39806 Sapria himalayana HOM05D015261 ORTHO05D001679 1.8e-14 84.7 306 34.6
Cfa006170 Carpinus fangiana HOM05D007167 ORTHO05D009486 6.8e-14 82.8 51 74.5
A05p22730 Brassica napus HOM05D001319 ORTHO05D000922 1.2e-13 82.0 47 83.0
A05p22740 Brassica napus HOM05D001319 ORTHO05D000922 1.2e-13 82.0 47 83.0
SHI35536 Sapria himalayana HOM05D015261 ORTHO05D000626 1.2e-13 82.0 303 34.3
SHI35538 Sapria himalayana HOM05D015261 ORTHO05D001679 1.2e-13 82.0 307 34.2
A06p25660 Brassica napus HOM05D000920 ORTHO05D010211 5.7e-13 79.7 99 48.5
SHI35535 Sapria himalayana HOM05D015261 ORTHO05D001679 1.3e-12 78.6 335 31.6
A06p25480 Brassica napus HOM05D001319 ORTHO05D000922 3.7e-12 77.0 42 88.1
C07p12460 Brassica napus HOM05D000920 ORTHO05D010211 4.9e-12 76.6 107 43.9
A01p26880 Brassica napus HOM05D000920 ORTHO05D010211 6.4e-12 76.3 99 46.5
Manes.S030952 Manihot esculenta HOM05D001319 ORTHO05D000922 2.4e-11 74.3 118 45.8
A09p30830 Brassica napus HOM05D000920 ORTHO05D010211 5.4e-11 73.2 99 45.5
BNapus_Darmor_BZH_scaffold_107p00090 Brassica napus HOM05D000920 ORTHO05D010211 5.4e-11 73.2 99 45.5
Sc07g0005250 Simmondsia chinensis HOM05D007167 ORTHO05D001679 7.0e-11 72.8 99 49.5
CBR_g28706 Chara braunii HOM05D010018 ORTHO05D003704 2.0e-10 71.2 44 77.3
Potri.008G224111 Populus trichocarpa HOM05D007167 ORTHO05D000922 2.0e-10 71.2 39 89.7
Potri.008G224701 Populus trichocarpa HOM05D007167 ORTHO05D000922 2.0e-10 71.2 39 89.7
Manes.S055616 Manihot esculenta HOM05D001319 ORTHO05D000922 2.7e-10 70.9 119 45.4
BcaC06g36787 Brassica carinata HOM05D000920 ORTHO05D003704 3.5e-10 70.5 84 56.0
MCO14G190 Micromonas commoda HOM05D007167 ORTHO05D001679 4.6e-10 70.1 37 83.8
MCO14G191 Micromonas commoda HOM05D007167 ORTHO05D001679 4.6e-10 70.1 37 83.8
MCO14G192 Micromonas commoda HOM05D007167 ORTHO05D001679 4.6e-10 70.1 37 83.8
QL93p0473_0011 Quercus lobata HOM05D016732 ORTHO05D001679 5.9e-10 69.7 41 78.0
QL93p0473_0019 Quercus lobata HOM05D016732 ORTHO05D001679 5.9e-10 69.7 41 78.0
QL93p0473_0029 Quercus lobata HOM05D016732 ORTHO05D001679 5.9e-10 69.7 41 78.0
QL93p0539_0002 Quercus lobata HOM05D016732 ORTHO05D001679 5.9e-10 69.7 41 78.0
QL93p0853_0005 Quercus lobata HOM05D016732 ORTHO05D001679 5.9e-10 69.7 41 78.0
ScUNg0000320 Simmondsia chinensis HOM05D007167 ORTHO05D013628 5.9e-10 69.7 58 60.3
Sopen00g004060 Solanum pennellii HOM05D001828 ORTHO05D001745 5.9e-10 69.7 41 80.5
unitig_885.g34271 Utricularia gibba HOM05D007167 ORTHO05D000922 5.9e-10 69.7 128 40.6
Manes.S024416 Manihot esculenta HOM05D001319 ORTHO05D000922 7.8e-10 69.3 116 42.2
CiPaw.15G104600 Carya illinoinensis HOM05D001319 ORTHO05D000922 1.0e-09 68.9 41 80.5
CiPaw.15G105500 Carya illinoinensis HOM05D001319 ORTHO05D000922 1.0e-09 68.9 41 80.5
Thecc.07G180900 Theobroma cacao HOM05D007167 ORTHO05D001679 1.0e-09 68.9 50 70.0
Manes.S008829 Manihot esculenta HOM05D007167 ORTHO05D000922 1.3e-09 68.6 38 86.8
Manes.S055516 Manihot esculenta HOM05D007167 ORTHO05D000922 1.3e-09 68.6 38 86.8
Manes.S056016 Manihot esculenta HOM05D007167 ORTHO05D000922 1.3e-09 68.6 38 86.8
A06p24650 Brassica napus HOM05D000920 ORTHO05D003704 1.7e-09 68.2 65 53.8
unitig_813.g34371 Utricularia gibba HOM05D007167 ORTHO05D000922 2.3e-09 67.8 61 62.3
TAR408G0001 Trochodendron aralioides HOM05D007167 ORTHO05D001679 3.0e-09 67.4 41 75.6
Migut.O00649 Erythranthe guttata HOM05D001319 ORTHO05D000922 5.0e-09 66.6 38 84.2
Glyma.13G012200 Glycine max HOM05D007167 ORTHO05D000922 5.0e-09 66.6 39 84.6
Glyma.U007802 Glycine max HOM05D001319 ORTHO05D000922 5.0e-09 66.6 39 84.6
Lj2g0014759 Lotus japonicus HOM05D001319 ORTHO05D000922 1.1e-08 65.5 68 58.8
Lj6g0022573 Lotus japonicus HOM05D001319 ORTHO05D000922 1.1e-08 65.5 68 58.8
LjContig00006g0020595 Lotus japonicus HOM05D001319 ORTHO05D000922 1.1e-08 65.5 68 58.8
LjContig00488g0020088 Lotus japonicus HOM05D001319 ORTHO05D000922 1.1e-08 65.5 68 58.8
QL93p0943_0001 Quercus lobata HOM05D016732 ORTHO05D001679 1.9e-08 64.7 40 75.0
Migut.A01243 Erythranthe guttata HOM05D001319 ORTHO05D000922 2.5e-08 64.3 59 59.3
CiPaw.15G100800 Carya illinoinensis HOM05D001319 ORTHO05D000922 9.5e-08 62.4 33 87.9
Carub.0002s0966 Capsella rubella HOM05D001319 ORTHO05D000922 1.2e-07 62.0 39 79.5
Carub.0026s0006 Capsella rubella HOM05D001319 ORTHO05D000922 1.2e-07 62.0 39 79.5
BcaB04g16894 Brassica carinata HOM05D001319 ORTHO05D000922 2.1e-07 61.2 38 81.6
Thhalv10028274m.g Eutrema salsugineum HOM05D001319 ORTHO05D000922 2.1e-07 61.2 38 81.6
Thhalv10028342m.g Eutrema salsugineum HOM05D001319 ORTHO05D000922 2.1e-07 61.2 38 81.6
BcaC06g35655 Brassica carinata HOM05D001319 ORTHO05D000922 2.8e-07 60.8 39 76.9
unitig_135.g35492 Utricularia gibba HOM05D007167 ORTHO05D000922 2.8e-07 60.8 105 43.8
arahy.Tifrunner.gnm1.ann1.J69F6A Arachis hypogaea HOM05D003608 ORTHO05D000917 4.7e-07 60.1 120 41.7
Migut.A01225 Erythranthe guttata HOM05D001319 ORTHO05D000922 4.7e-07 60.1 155 35.5
A06p23900 Brassica napus HOM05D001319 ORTHO05D000922 8.0e-07 59.3 36 77.8
Cre14.g634322 Chlamydomonas reinhardtii HOM05D007167 ORTHO05D000922 1.1e-06 58.9 48 62.5
Cre14.g634365 Chlamydomonas reinhardtii HOM05D007167 ORTHO05D000922 1.1e-06 58.9 48 62.5
A06p25410 Brassica napus HOM05D001319 ORTHO05D000922 1.4e-06 58.5 37 78.4
arahy.Tifrunner.gnm1.ann1.62DUUZ Arachis hypogaea HOM05D003608 ORTHO05D000917 1.8e-06 58.2 116 41.4
Sc21g0003500 Simmondsia chinensis HOM05D007167 ORTHO05D014130 1.8e-06 58.2 49 63.3
MELO3C027007.2 Cucumis melo HOM05D007167 ORTHO05D000922 3.1e-06 57.4 36 77.8
BNapus_Darmor_BZH_scaffold_192p00030 Brassica napus HOM05D000920 ORTHO05D000922 5.2e-06 56.6 76 44.7
A05p22750 Brassica napus HOM05D001319 ORTHO05D000922 8.9e-06 55.8 39 66.7
A05p22760 Brassica napus HOM05D001319 ORTHO05D000922 8.9e-06 55.8 39 66.7
Migut.A01195 Erythranthe guttata HOM05D001319 ORTHO05D000922 8.9e-06 55.8 33 78.8


User provided reference genes

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