Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 5.6e-175 617.5 302 100.0
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 1.5e-135 486.5 303 76.2
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.8e-134 482.3 303 75.2
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.8e-133 479.6 303 73.6
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 5.8e-132 474.6 303 74.3
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.2e-129 466.8 302 71.5
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 6.1e-129 464.5 302 74.2
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 1.0e-128 463.8 302 72.2
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 3.0e-128 462.2 302 72.5
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 3.9e-128 461.8 302 70.5
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 1.5e-127 459.9 302 70.5
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 2.5e-127 459.1 303 71.9
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 4.3e-127 458.4 302 71.5
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.6e-126 456.4 299 72.9
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.6e-126 456.4 308 70.8
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 3.7e-126 455.3 303 71.9
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 8.2e-126 454.1 302 70.5
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.4e-125 452.6 299 69.6
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 4.1e-125 451.8 302 70.2
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.0e-124 449.5 303 70.0
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 2.6e-124 449.1 302 69.5
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 2.6e-124 449.1 302 70.5
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 2.6e-124 449.1 302 70.9
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 2.6e-124 449.1 303 70.3
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 5.9e-124 448.0 303 69.3
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 1.7e-123 446.4 302 72.2
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 2.2e-123 446.0 302 70.5
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 2.2e-123 446.0 302 69.5
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 2.2e-123 446.0 302 71.2
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 8.5e-123 444.1 302 71.2
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.4e-122 443.4 308 68.8
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.9e-122 443.0 296 68.6
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 2.5e-122 442.6 303 69.6
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 3.2e-122 442.2 302 68.2
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 4.2e-122 441.8 302 68.2
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 4.2e-122 441.8 304 71.4
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 5.5e-122 441.4 303 69.3
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 5.5e-122 441.4 302 69.2
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 9.4e-122 440.7 304 70.1
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 1.2e-121 440.3 303 68.6
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 2.7e-121 439.1 302 70.9
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 2.7e-121 439.1 302 69.5
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 4.6e-121 438.3 302 68.2
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 6.1e-121 438.0 302 67.5
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 1.4e-120 436.8 308 69.2
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.4e-120 436.8 303 68.3
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.8e-120 436.4 302 67.2
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 2.3e-120 436.0 299 68.9
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 2.3e-120 436.0 302 68.2
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 2.3e-120 436.0 296 68.9
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 2.3e-120 436.0 302 69.2
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 3.0e-120 435.6 303 66.7
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 2.0e-119 433.0 303 67.0
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 2.5e-119 432.6 303 67.0
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 3.7e-118 428.7 333 62.8
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 4.8e-118 428.3 332 63.3
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 6.3e-118 427.9 334 62.6
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.8e-117 426.4 281 73.0
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.8e-117 426.4 302 67.2
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 3.1e-117 425.6 302 65.9
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 5.3e-117 424.9 302 67.2
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.5e-116 423.3 289 71.3
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 2.6e-116 422.5 300 66.7
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 4.5e-116 421.8 302 65.6
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 7.7e-116 421.0 300 66.7
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 2.9e-115 419.1 309 65.7
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 5.0e-115 418.3 302 66.2
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 6.5e-115 417.9 302 66.9
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.4e-114 416.8 316 62.3
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 3.2e-114 415.6 301 66.8
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 3.2e-114 415.6 302 64.2
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 5.5e-114 414.8 300 65.7
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 5.5e-114 414.8 300 66.3
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 9.4e-114 414.1 300 65.7
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 2.1e-113 412.9 273 70.0
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 7.9e-113 411.0 289 66.4
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.3e-112 409.5 307 64.5
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 3.9e-112 408.7 323 62.5
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 3.9e-112 408.7 302 66.2
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 5.1e-112 408.3 302 65.6
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 2.0e-111 406.4 302 65.2
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 8.2e-110 401.0 302 64.6
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 1.0e-107 394.0 305 63.3
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 1.3e-107 393.7 302 63.9
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 1.2e-105 387.1 309 63.4
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 1.6e-105 386.7 363 55.1
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 8.0e-105 384.4 283 65.0
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.8e-104 383.3 285 68.1
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.1e-103 380.6 282 67.7
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.1e-103 380.6 282 67.4
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 7.4e-103 377.9 283 66.1
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 1.8e-101 373.2 303 60.7
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 9.1e-101 370.9 341 54.0
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.2e-92 344.0 283 61.1
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 2.7e-92 342.8 303 55.8
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 2.7e-92 342.8 314 53.5
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 4.5e-92 342.0 303 56.8
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 4.5e-92 342.0 302 57.6
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 8.8e-88 327.8 291 56.7
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.5e-87 327.0 307 56.4
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 2.0e-87 326.6 294 56.8
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 6.3e-86 321.6 307 54.4
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 4.1e-85 318.9 285 58.6
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 7.7e-84 314.7 215 69.8
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.8e-80 303.5 223 65.5
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 3.2e-77 292.7 224 63.4
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 9.5e-74 281.2 193 68.9
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 3.6e-73 279.3 297 47.1
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 1.4e-72 277.3 194 68.0
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.7e-68 263.1 200 66.0
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.5e-66 256.5 192 69.3
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 3.3e-66 256.1 191 62.3
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.1e-64 251.1 214 57.9
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.3e-64 250.0 166 73.5
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 1.2e-60 237.7 233 56.2
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 1.2e-57 227.6 390 36.9
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.3e-51 207.6 164 62.8
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 8.6e-51 204.9 137 73.7
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 1.9e-50 203.8 148 60.8
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 1.2e-49 201.1 301 38.2
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 5.2e-48 195.7 211 49.8
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.0e-39 167.2 131 62.6
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.7e-36 156.8 105 66.7
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 6.0e-36 155.6 293 35.2
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 1.6e-33 147.5 285 32.3
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 8.1e-33 145.2 272 33.8
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 3.1e-32 143.3 113 61.1
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 4.3e-26 122.9 105 55.2
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 7.4e-26 122.1 83 66.3
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 5.3e-16 89.4 87 52.9
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.1e-12 77.4 53 66.0
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 2.1e-12 77.4 56 60.7
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.3e-11 73.9 154 33.8
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.5e-10 71.2 50 60.0
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.9e-10 70.9 67 52.2
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 9.7e-10 68.6 80 48.8


User provided reference genes

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