Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 3.9e-136 488.0 233 100.0
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 2.9e-70 269.2 212 58.5
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 5.4e-69 265.0 206 60.2
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 1.2e-68 263.8 171 69.6
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 1.2e-68 263.8 176 69.3
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 3.5e-68 262.3 203 60.1
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 7.8e-68 261.2 229 58.1
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 3.0e-67 259.2 183 67.2
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 3.0e-67 259.2 180 65.0
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 3.0e-67 259.2 199 61.8
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 3.9e-67 258.8 203 58.6
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 5.1e-67 258.5 217 56.7
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 8.7e-67 257.7 213 57.7
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.5e-66 256.9 234 53.4
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 4.3e-66 255.4 181 62.4
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.1e-65 253.1 221 55.7
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 2.8e-65 252.7 204 58.8
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.8e-64 250.0 181 61.3
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 3.1e-64 249.2 212 54.7
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 4.0e-64 248.8 204 54.9
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 5.3e-64 248.4 192 60.9
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 6.9e-64 248.1 212 54.7
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 9.0e-64 247.7 191 58.1
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.2e-63 247.3 173 62.4
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.5e-63 246.9 212 54.7
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 2.0e-63 246.5 204 54.9
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 2.6e-63 246.1 210 55.2
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 3.4e-63 245.7 215 54.9
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.4e-63 245.7 174 65.5
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 3.4e-63 245.7 171 65.5
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 4.5e-63 245.4 171 64.3
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 7.6e-63 244.6 183 60.1
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 9.9e-63 244.2 182 61.0
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 1.3e-62 243.8 186 62.4
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 2.2e-62 243.0 201 57.7
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 2.9e-62 242.7 206 55.8
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 2.9e-62 242.7 172 64.5
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 3.8e-62 242.3 186 55.9
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 4.9e-62 241.9 201 57.2
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 8.4e-62 241.1 181 59.1
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 3.2e-61 239.2 182 59.9
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 3.2e-61 239.2 196 55.6
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 4.2e-61 238.8 191 57.1
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 5.4e-61 238.4 175 60.6
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 5.4e-61 238.4 180 61.7
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 2.1e-60 236.5 170 65.9
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 2.7e-60 236.1 196 58.2
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.0e-59 234.2 195 54.9
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 1.3e-59 233.8 173 60.1
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 1.3e-59 233.8 170 64.7
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 1.8e-59 233.4 186 54.8
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 3.9e-59 232.3 175 59.4
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 3.9e-59 232.3 210 50.5
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 5.1e-59 231.9 196 53.1
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 6.7e-59 231.5 173 59.0
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 8.7e-59 231.1 225 49.8
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 8.7e-59 231.1 195 51.8
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 2.5e-58 229.6 173 59.5
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 3.3e-58 229.2 204 51.5
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 3.3e-58 229.2 191 51.3
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 5.6e-58 228.4 231 52.4
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 5.6e-58 228.4 201 51.2
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 9.6e-58 227.6 169 62.1
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 9.6e-58 227.6 172 59.3
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 2.8e-57 226.1 178 55.1
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 3.7e-57 225.7 172 60.5
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.1e-56 224.2 223 51.6
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.4e-56 223.0 183 56.3
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 4.0e-56 222.2 172 59.3
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 4.0e-56 222.2 172 59.3
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 4.0e-56 222.2 167 60.5
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 6.9e-56 221.5 231 48.9
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 9.0e-56 221.1 209 53.1
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.5e-55 220.3 175 56.0
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 1.5e-55 220.3 183 57.4
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 2.0e-55 219.9 171 57.9
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 9.9e-55 217.6 215 52.1
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 9.9e-55 217.6 215 52.1
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 2.2e-54 216.5 179 54.2
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 4.9e-54 215.3 158 64.6
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 1.1e-53 214.2 172 58.1
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 1.9e-53 213.4 172 58.1
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 9.3e-53 211.1 193 50.3
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 2.7e-52 209.5 151 62.9
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 1.1e-50 204.1 171 53.8
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.5e-50 203.8 225 47.1
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 3.7e-49 199.1 168 53.0
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 1.8e-48 196.8 168 52.4
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.4e-47 192.6 191 49.2
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 3.8e-46 189.1 160 54.4
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.1e-44 183.3 140 62.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.1e-37 161.0 190 41.6
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 5.1e-35 152.1 114 62.3
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 8.7e-35 151.4 121 59.5
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 1.5e-34 150.6 158 51.3
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 3.3e-34 149.4 119 59.7
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 5.7e-34 148.7 134 53.0
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.9e-29 133.7 175 36.0
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 3.0e-27 126.3 118 51.7
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 1.4e-24 117.5 134 43.3
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 5.2e-19 99.0 84 47.6
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 3.3e-18 96.3 183 29.5
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 5.7e-18 95.5 84 47.6
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 7.4e-18 95.1 152 30.9
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 1.3e-17 94.4 181 30.4
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 1.7e-17 94.0 223 29.1
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 6.3e-17 92.0 172 28.5
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 8.2e-17 91.7 172 28.5
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.1e-16 91.3 111 44.1
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 1.1e-16 91.3 101 45.5
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.1e-16 91.3 153 32.7
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.1e-16 91.3 109 41.3
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 1.4e-16 90.9 153 31.4
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 4.1e-16 89.4 172 31.4
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 5.3e-16 89.0 212 26.9
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 7.0e-16 88.6 63 58.7
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 9.1e-16 88.2 66 59.1
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 2.0e-15 87.0 189 28.0
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 7.7e-15 85.1 190 26.8
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 2.9e-14 83.2 60 66.7
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 3.8e-14 82.8 73 57.5
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 5.0e-14 82.4 171 26.3
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 8.5e-14 81.6 199 27.6
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 8.5e-14 81.6 223 25.1
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 8.5e-14 81.6 159 28.9
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 1.1e-13 81.3 164 26.8
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 1.9e-13 80.5 206 24.8
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 2.5e-13 80.1 171 25.7
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 2.5e-13 80.1 136 28.7
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 3.2e-13 79.7 185 25.9
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 7.2e-13 78.6 160 28.1
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 9.4e-13 78.2 130 31.5
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.2e-12 77.8 206 24.8
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 1.2e-12 77.8 155 27.1
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 2.1e-12 77.0 162 27.8
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 4.7e-12 75.9 155 28.4
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 6.1e-12 75.5 172 25.6
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 6.1e-12 75.5 182 30.8
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.8e-11 73.9 154 27.9
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 2.3e-11 73.6 206 24.3
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 5.2e-11 72.4 177 26.6
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 5.2e-11 72.4 206 26.7
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 8.8e-11 71.6 158 25.9
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 1.2e-10 71.2 135 24.4
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 1.5e-10 70.9 192 27.1
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 2.6e-10 70.1 163 27.0
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 2.6e-10 70.1 177 28.8
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 3.3e-10 69.7 160 28.1
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 5.7e-10 68.9 164 25.0
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.3e-09 67.8 151 31.1
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 1.7e-09 67.4 170 26.5
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 2.2e-09 67.0 156 24.4
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 3.7e-09 66.2 150 25.3
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 6.3e-09 65.5 158 24.7
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 5.3e-08 62.4 108 31.5
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 9.1e-08 61.6 135 23.7
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 3.5e-07 59.7 136 26.5
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.0e-06 58.2 145 23.4
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.7e-06 57.4 48 52.1
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 2.2e-06 57.0 156 28.2
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 2.9e-06 56.6 36 58.3
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 3.8e-06 56.2 150 26.0
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 3.8e-06 56.2 175 21.1


User provided reference genes

Program Settings