Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 1.0e-146 523.5 287 100.0
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 1.4e-82 310.5 252 66.7
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 2.2e-80 303.1 252 64.3
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 1.4e-79 300.4 265 61.9
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 1.2e-78 297.4 249 62.7
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 4.6e-78 295.4 255 61.6
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 6.0e-78 295.0 257 61.1
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 2.3e-77 293.1 259 62.2
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 3.9e-77 292.4 261 59.4
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 5.1e-77 292.0 256 61.3
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 6.7e-77 291.6 257 61.1
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 6.7e-77 291.6 218 68.3
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 2.5e-76 289.7 265 58.5
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 4.3e-76 288.9 260 62.3
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 9.6e-76 287.7 263 59.3
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 1.6e-75 287.0 184 75.0
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 2.8e-75 286.2 256 60.2
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 6.2e-75 285.0 261 58.2
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 8.2e-75 284.6 253 59.7
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 1.4e-74 283.9 252 60.3
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 6.9e-74 281.6 272 59.2
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 9.0e-74 281.2 179 74.9
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 1.2e-73 280.8 262 58.8
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 1.5e-73 280.4 227 64.3
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 2.0e-73 280.0 242 61.6
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 2.6e-73 279.6 254 60.2
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 2.6e-73 279.6 221 63.8
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 4.5e-73 278.9 240 59.6
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 1.0e-72 277.7 285 56.1
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 1.3e-72 277.3 251 61.4
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 1.7e-72 276.9 249 59.8
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 6.5e-72 275.0 260 58.5
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 8.4e-72 274.6 256 57.4
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 1.4e-71 273.9 256 57.8
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 3.2e-71 272.7 246 59.8
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 3.2e-71 272.7 264 56.4
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 4.2e-71 272.3 266 59.0
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 4.2e-71 272.3 239 59.0
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 5.5e-71 271.9 265 58.1
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 5.5e-71 271.9 185 71.9
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 7.1e-71 271.6 260 57.7
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 1.2e-70 270.8 254 59.4
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 1.2e-70 270.8 264 55.7
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 1.6e-70 270.4 260 56.2
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 3.5e-70 269.2 198 66.2
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 3.5e-70 269.2 180 72.2
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 6.0e-70 268.5 253 56.5
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 6.0e-70 268.5 232 62.1
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 1.0e-69 267.7 256 57.4
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 1.8e-69 266.9 250 57.6
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 1.8e-69 266.9 276 55.1
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 6.7e-69 265.0 194 66.0
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 1.1e-68 264.2 176 72.2
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 1.1e-68 264.2 211 61.1
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 1.9e-68 263.5 257 57.6
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.9e-68 263.5 177 70.6
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 3.3e-68 262.7 250 55.6
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 4.3e-68 262.3 251 57.8
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 4.3e-68 262.3 264 56.4
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 5.7e-68 261.9 185 67.0
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 5.7e-68 261.9 226 60.6
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 9.7e-68 261.2 251 56.2
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 1.3e-67 260.8 274 53.3
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 2.8e-67 259.6 257 53.7
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 1.1e-66 257.7 308 49.0
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 2.4e-66 256.5 247 55.9
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 3.1e-66 256.1 262 53.1
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 5.3e-66 255.4 236 58.5
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 1.5e-65 253.8 251 55.4
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 2.0e-65 253.4 249 57.8
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 5.9e-65 251.9 248 58.1
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 5.9e-65 251.9 260 54.6
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 3.8e-64 249.2 203 61.6
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 3.8e-64 249.2 225 59.1
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 1.1e-63 247.7 258 54.7
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 5.5e-63 245.4 251 54.2
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 1.2e-62 244.2 240 54.6
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 1.6e-62 243.8 187 64.7
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 1.6e-62 243.8 252 52.4
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 1.6e-62 243.8 239 54.8
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 3.6e-62 242.7 185 65.9
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 3.6e-62 242.7 272 51.8
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 1.0e-61 241.1 249 56.2
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 2.0e-60 236.9 249 53.8
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 3.3e-60 236.1 195 59.5
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 4.3e-60 235.7 206 60.2
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 8.2e-59 231.5 255 49.0
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 2.6e-57 226.5 273 46.5
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 3.8e-56 222.6 207 55.1
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 8.5e-56 221.5 255 50.2
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 1.9e-55 220.3 251 51.4
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 1.0e-53 214.5 198 56.1
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 1.4e-53 214.2 138 72.5
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 3.5e-49 199.5 176 56.2
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 2.5e-47 193.4 125 72.8
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 1.0e-45 188.0 171 57.3
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 5.2e-45 185.7 203 52.2
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 1.5e-44 184.1 173 50.9
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 1.4e-42 177.6 184 49.5
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-40 168.7 174 51.7
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 1.1e-39 167.9 131 63.4
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 2.0e-36 157.1 193 51.8
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 2.2e-35 153.7 194 48.5
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 3.2e-31 139.8 81 80.2
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 1.2e-30 137.9 179 48.6
Glyma.14G089100 Glycine max HOM05D007224 ORTHO05D009169 1.8e-26 124.0 92 66.3
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 3.1e-26 123.2 174 46.6
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 3.0e-21 106.7 80 58.8
MCO05G240 Micromonas commoda HOM05D007224 ORTHO05D009169 6.8e-21 105.5 152 42.1
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 5.2e-13 79.3 95 45.3
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 6.4e-11 72.4 42 83.3


User provided reference genes

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