Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0003880 Simmondsia chinensis HOM05D000235 ORTHO05D012707 8.3e-43 176.8 100 100.0
Sc26g0003930 Simmondsia chinensis HOM05D000235 ORTHO05D000147 1.6e-17 92.8 102 52.0
Sc26g0003910 Simmondsia chinensis HOM05D000235 ORTHO05D000147 7.9e-17 90.5 67 70.1
Sc26g0003920 Simmondsia chinensis HOM05D000235 ORTHO05D000147 6.7e-16 87.4 67 67.2
PSO170G4759 Papaver somniferum HOM05D000235 ORTHO05D000147 2.5e-10 68.9 66 47.0
Hund26605 Selenicereus undatus HOM05D000235 ORTHO05D000147 3.2e-10 68.6 66 54.5
Hund26606 Selenicereus undatus HOM05D000235 ORTHO05D000147 3.2e-10 68.6 66 54.5
CSS0035315 Camellia sinensis var. sinensis HOM05D000235 ORTHO05D000147 7.1e-10 67.4 102 42.2
PSO132G0003 Papaver somniferum HOM05D000235 ORTHO05D000147 1.2e-09 66.6 66 45.5
Ciclev10000809m.g Citrus clementina HOM05D000235 ORTHO05D000147 1.3e-08 63.2 88 44.3
Hund26602 Selenicereus undatus HOM05D000235 ORTHO05D000147 1.3e-08 63.2 66 53.0
Prupe.1G537600 Prunus persica HOM05D000235 ORTHO05D000147 1.8e-08 62.8 65 46.2
QL06p044008 Quercus lobata HOM05D000235 ORTHO05D000147 3.0e-08 62.0 66 54.5
Dinv39361 Davidia involucrata HOM05D000235 ORTHO05D000147 3.9e-08 61.6 87 40.2
Hund26598 Selenicereus undatus HOM05D000235 ORTHO05D000147 3.9e-08 61.6 66 51.5
Sc15g0006630 Simmondsia chinensis HOM05D000235 ORTHO05D000147 3.9e-08 61.6 66 51.5
Sc15g0006650 Simmondsia chinensis HOM05D000235 ORTHO05D000147 3.9e-08 61.6 66 51.5
COL.COLO4_22194 Corchorus olitorius HOM05D000235 ORTHO05D000147 5.1e-08 61.2 70 50.0
FAN10G3759 Fragaria x ananassa HOM05D000235 ORTHO05D000147 5.1e-08 61.2 106 38.7
TWI63G0162 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 5.1e-08 61.2 66 50.0
Ciclev10000844m.g Citrus clementina HOM05D000235 ORTHO05D000147 6.7e-08 60.8 87 42.5
Ciclev10001118m.g Citrus clementina HOM05D000235 ORTHO05D000147 6.7e-08 60.8 87 42.5
FAN01G2066 Fragaria x ananassa HOM05D000235 ORTHO05D000147 6.7e-08 60.8 106 38.7
Thecc.04G140100 Theobroma cacao HOM05D000235 ORTHO05D000147 6.7e-08 60.8 101 39.6
Thecc.01G046800 Theobroma cacao HOM05D000235 ORTHO05D000147 8.7e-08 60.5 95 42.1
Dinv26766 Davidia involucrata HOM05D000235 ORTHO05D000147 1.1e-07 60.1 66 51.5
CiPaw.15G067100 Carya illinoinensis HOM05D000235 ORTHO05D000147 1.5e-07 59.7 66 48.5
FAN01G2281 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.5e-07 59.7 105 37.1
vmacro21573 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 1.5e-07 59.7 66 42.4
vmacro21585 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 1.5e-07 59.7 68 47.1
Cfa018471 Carpinus fangiana HOM05D000235 ORTHO05D000147 1.9e-07 59.3 66 48.5
Glyma.11G060100 Glycine max HOM05D000235 ORTHO05D000147 1.9e-07 59.3 66 48.5
Gohir.A11G188666 Gossypium hirsutum HOM05D000235 ORTHO05D000147 2.5e-07 58.9 66 47.0
TWI39G0315 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 2.5e-07 58.9 66 45.5
Dinv39363 Davidia involucrata HOM05D000235 ORTHO05D000147 3.3e-07 58.5 66 47.0
ECA247G1917 Erigeron canadensis HOM05D000235 ORTHO05D000147 3.3e-07 58.5 66 47.0
Manes.05G167900 Manihot esculenta HOM05D000235 ORTHO05D000147 3.3e-07 58.5 66 45.5
Medtr5g018480 Medicago truncatula HOM05D000235 ORTHO05D000147 3.3e-07 58.5 66 48.5
Rhsim06G0040400 Rhododendron simsii HOM05D000235 ORTHO05D000147 3.3e-07 58.5 66 43.9
RhsimUnG0059500 Rhododendron simsii HOM05D000235 ORTHO05D000147 3.3e-07 58.5 68 48.5
GSVIVG01005088001 Vitis vinifera HOM05D000235 ORTHO05D000147 3.3e-07 58.5 101 38.6
CANSAT01G0550 Cannabis sativa HOM05D000235 ORTHO05D000147 4.3e-07 58.2 111 45.0
Cfa008891 Carpinus fangiana HOM05D000235 ORTHO05D000147 4.3e-07 58.2 103 39.8
Eucgr.F02402 Eucalyptus grandis HOM05D000235 ORTHO05D000147 4.3e-07 58.2 66 47.0
Gohir.A11G188700 Gossypium hirsutum HOM05D000235 ORTHO05D000147 4.3e-07 58.2 66 47.0
Lj4A48G70 Lonicera japonica HOM05D000235 ORTHO05D000147 4.3e-07 58.2 67 43.3
PSO132G0007 Papaver somniferum HOM05D000235 ORTHO05D000147 4.3e-07 58.2 66 47.0
PSO170G4812 Papaver somniferum HOM05D000235 ORTHO05D000147 4.3e-07 58.2 66 47.0
Prupe.1G537400 Prunus persica HOM05D000235 ORTHO05D000147 4.3e-07 58.2 65 43.1
PGR031G2438 Punica granatum HOM05D000235 ORTHO05D000147 4.3e-07 58.2 68 47.1
Rhsim06G0040100 Rhododendron simsii HOM05D000235 ORTHO05D000147 4.3e-07 58.2 68 48.5
Atru.chr3.458 Acer truncatum HOM05D000235 ORTHO05D000147 5.7e-07 57.8 70 48.6
Ciclev10003405m.g Citrus clementina HOM05D000235 ORTHO05D000147 5.7e-07 57.8 102 36.3
COL.COLO4_03339 Corchorus olitorius HOM05D000235 ORTHO05D000147 5.7e-07 57.8 70 48.6
FAN03G0321 Fragaria x ananassa HOM05D000235 ORTHO05D000147 5.7e-07 57.8 103 39.8
Manes.05G167000 Manihot esculenta HOM05D000235 ORTHO05D000147 5.7e-07 57.8 66 45.5
Prupe.1G537700 Prunus persica HOM05D000235 ORTHO05D000147 5.7e-07 57.8 67 46.3
Prupe.1G538000 Prunus persica HOM05D000235 ORTHO05D000147 5.7e-07 57.8 67 46.3
Prupe.1G538200 Prunus persica HOM05D000235 ORTHO05D000147 5.7e-07 57.8 67 46.3
RhsimUnG0059700 Rhododendron simsii HOM05D000235 ORTHO05D000147 5.7e-07 57.8 68 48.5
TAR628G0346 Trochodendron aralioides HOM05D000235 ORTHO05D000147 5.7e-07 57.8 66 48.5
TAR629G2413 Trochodendron aralioides HOM05D000235 ORTHO05D000147 5.7e-07 57.8 65 50.8
Atru.chr3.460 Acer truncatum HOM05D000235 ORTHO05D000147 7.4e-07 57.4 71 46.5
Cfa018470 Carpinus fangiana HOM05D000235 ORTHO05D000147 7.4e-07 57.4 66 47.0
Haze_11923 Corylus avellana HOM05D000235 ORTHO05D000147 7.4e-07 57.4 103 37.9
Haze_11975 Corylus avellana HOM05D000235 ORTHO05D000147 7.4e-07 57.4 103 38.8
Dinv39362 Davidia involucrata HOM05D000235 ORTHO05D000147 7.4e-07 57.4 66 43.9
FvH4_7g22810 Fragaria vesca HOM05D000235 ORTHO05D000147 7.4e-07 57.4 106 36.8
FAN03G2719 Fragaria x ananassa HOM05D000235 ORTHO05D000147 7.4e-07 57.4 106 34.9
FAN06G3903 Fragaria x ananassa HOM05D000235 ORTHO05D000147 7.4e-07 57.4 106 36.8
Gohir.A11G188633 Gossypium hirsutum HOM05D000235 ORTHO05D000147 7.4e-07 57.4 89 39.3
Gorai.007G208700 Gossypium raimondii HOM05D000235 ORTHO05D000147 7.4e-07 57.4 95 38.9
Gorai.007G208800 Gossypium raimondii HOM05D000235 ORTHO05D000147 7.4e-07 57.4 95 38.9
RcHm_v2.0_Chr1g0359661 Rosa chinensis HOM05D000235 ORTHO05D000147 7.4e-07 57.4 106 38.7
Sc02g0002010 Simmondsia chinensis HOM05D000235 ORTHO05D000147 7.4e-07 57.4 68 45.6
TAR629G1067 Trochodendron aralioides HOM05D000235 ORTHO05D000147 7.4e-07 57.4 65 49.2
Cfa012373 Carpinus fangiana HOM05D000235 ORTHO05D000147 9.6e-07 57.0 67 46.3
Ciclev10000845m.g Citrus clementina HOM05D000235 ORTHO05D000147 9.6e-07 57.0 87 41.4
Haze_19218 Corylus avellana HOM05D000235 ORTHO05D000147 9.6e-07 57.0 102 39.2
Eucgr.F02405 Eucalyptus grandis HOM05D000235 ORTHO05D000147 9.6e-07 57.0 66 47.0
Sc15g0006640 Simmondsia chinensis HOM05D000235 ORTHO05D000147 9.6e-07 57.0 66 48.5
TWI36G0785 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 9.6e-07 57.0 105 33.3
TAR628G1535 Trochodendron aralioides HOM05D000235 ORTHO05D000147 9.6e-07 57.0 65 50.8
Cfa004225 Carpinus fangiana HOM05D000235 ORTHO05D000147 1.3e-06 56.6 66 48.5
Haze_17598 Corylus avellana HOM05D000235 ORTHO05D000147 1.3e-06 56.6 66 45.5
Thecc.01G046700 Theobroma cacao HOM05D000235 ORTHO05D000147 1.3e-06 56.6 66 47.0
TPR.G11362 Trifolium pratense HOM05D000235 ORTHO05D000147 1.3e-06 56.6 66 47.0
TWI34G1246 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 1.3e-06 56.6 66 47.0
TWI56G0772 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 1.3e-06 56.6 87 41.4
CiPaw.15G076500 Carya illinoinensis HOM05D000235 ORTHO05D000147 1.6e-06 56.2 66 47.0
CiPaw.15G076600 Carya illinoinensis HOM05D000235 ORTHO05D000147 1.6e-06 56.2 66 47.0
CiPaw.15G076700 Carya illinoinensis HOM05D000235 ORTHO05D000147 1.6e-06 56.2 66 47.0
CiPaw.15G076900 Carya illinoinensis HOM05D000235 ORTHO05D000147 1.6e-06 56.2 66 47.0
Haze_17597 Corylus avellana HOM05D000235 ORTHO05D000147 1.6e-06 56.2 68 48.5
FAN06G1221 Fragaria x ananassa HOM05D000235 ORTHO05D000147 1.6e-06 56.2 105 37.1
Lsat_1_v5_gn_1_19681 Lactuca sativa HOM05D000235 ORTHO05D000147 1.6e-06 56.2 66 43.9
Lsat_1_v5_gn_1_19741 Lactuca sativa HOM05D000235 ORTHO05D000147 1.6e-06 56.2 66 43.9
PGR031G0523 Punica granatum HOM05D000235 ORTHO05D000147 1.6e-06 56.2 66 45.5
TWI12G0402 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 1.6e-06 56.2 102 35.3
TWI36G0297 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 1.6e-06 56.2 66 42.4
Cfa018469 Carpinus fangiana HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 43.9
Ciclev10000851m.g Citrus clementina HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 48.5
Haze_11090 Corylus avellana HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 43.9
Haze_15177 Corylus avellana HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 48.5
Haze_17596 Corylus avellana HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 45.5
Duzib041G0634 Durio zibethinus HOM05D000235 ORTHO05D000147 2.1e-06 55.8 102 36.3
Gohir.D11G195200 Gossypium hirsutum HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 45.5
Lj6A551T5 Lonicera japonica HOM05D000235 ORTHO05D000147 2.1e-06 55.8 102 35.3
Manes.18G026200 Manihot esculenta HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 42.4
Nn2g13071 Nelumbo nucifera HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 45.5
PGR083G1886 Punica granatum HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 45.5
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.1e-06 55.8 68 47.1
RcHm_v2.0_Chr6g0300161 Rosa chinensis HOM05D000235 ORTHO05D000147 2.1e-06 55.8 66 45.5
RcHm_v2.0_Chr7g0233631 Rosa chinensis HOM05D000235 ORTHO05D000147 2.1e-06 55.8 67 41.8
Atru.chr3.457 Acer truncatum HOM05D000235 ORTHO05D000147 2.8e-06 55.5 66 47.0
Atru.chr9.1081 Acer truncatum HOM05D000235 ORTHO05D012707 2.8e-06 55.5 67 47.8
Cfa008892 Carpinus fangiana HOM05D000235 ORTHO05D000147 2.8e-06 55.5 102 36.3
Ciclev10001614m.g Citrus clementina HOM05D000235 ORTHO05D000147 2.8e-06 55.5 67 46.3
HanXRQChr02g0038391 Helianthus annuus HOM05D000235 ORTHO05D000147 2.8e-06 55.5 66 42.4
Lj6g0027681 Lotus japonicus HOM05D000235 ORTHO05D000147 2.8e-06 55.5 104 34.6
Ciclev10025349m.g Citrus clementina HOM05D000235 ORTHO05D000147 3.7e-06 55.1 66 42.4
FAN15G1794 Fragaria x ananassa HOM05D000235 ORTHO05D000147 3.7e-06 55.1 66 37.9
HanXRQChr07g0196361 Helianthus annuus HOM05D000235 ORTHO05D000147 3.7e-06 55.1 104 35.6
Lj6C550T2 Lonicera japonica HOM05D000235 ORTHO05D000147 3.7e-06 55.1 66 42.4
Manes.18G027595 Manihot esculenta HOM05D000235 ORTHO05D000147 3.7e-06 55.1 65 47.7
PSO675G3172 Papaver somniferum HOM05D000235 ORTHO05D000147 3.7e-06 55.1 66 45.5
Prupe.1G387000 Prunus persica HOM05D000235 ORTHO05D000147 3.7e-06 55.1 97 37.1
PGR031G1701 Punica granatum HOM05D000235 ORTHO05D000147 3.7e-06 55.1 67 46.3
PGR031G3446 Punica granatum HOM05D000235 ORTHO05D000147 3.7e-06 55.1 67 46.3
PGR127G0003 Punica granatum HOM05D000235 ORTHO05D000147 3.7e-06 55.1 67 46.3
RcHm_v2.0_Chr1g0359671 Rosa chinensis HOM05D000235 ORTHO05D000147 3.7e-06 55.1 103 39.8
vmacro21572 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 3.7e-06 55.1 66 40.9
Atru.chr9.1085 Acer truncatum HOM05D000235 ORTHO05D000147 4.8e-06 54.7 87 43.7
Haze_03554 Corylus avellana HOM05D000235 ORTHO05D000147 4.8e-06 54.7 68 47.1
Eucgr.H01963 Eucalyptus grandis HOM05D000235 ORTHO05D000147 4.8e-06 54.7 66 45.5
Eucgr.L02217 Eucalyptus grandis HOM05D000235 ORTHO05D000147 4.8e-06 54.7 66 45.5
Phvul.002G022900 Phaseolus vulgaris HOM05D000235 ORTHO05D000147 4.8e-06 54.7 66 45.5
Potri.014G038200 Populus trichocarpa HOM05D000235 ORTHO05D000147 4.8e-06 54.7 102 38.2
QL12p001176 Quercus lobata HOM05D000235 ORTHO05D000147 4.8e-06 54.7 66 48.5
QL12p001182 Quercus lobata HOM05D000235 ORTHO05D000147 4.8e-06 54.7 66 48.5
RcHm_v2.0_Chr7g0223401 Rosa chinensis HOM05D000235 ORTHO05D000147 4.8e-06 54.7 67 44.8
TAR628G0121 Trochodendron aralioides HOM05D000235 ORTHO05D000147 4.8e-06 54.7 65 49.2
VMungo1215G0671 Vigna mungo HOM05D000235 ORTHO05D000147 4.8e-06 54.7 66 45.5
Ciclev10000846m.g Citrus clementina HOM05D000235 ORTHO05D000147 6.2e-06 54.3 87 37.9
DCAR_010941 Daucus carota HOM05D000235 ORTHO05D000147 6.2e-06 54.3 65 49.2
Eucgr.B02554 Eucalyptus grandis HOM05D000235 ORTHO05D000147 6.2e-06 54.3 68 44.1
Psat2g164080 Pisum sativum HOM05D000235 ORTHO05D000147 6.2e-06 54.3 66 45.5
Rhsim06G0040600 Rhododendron simsii HOM05D000235 ORTHO05D000147 6.2e-06 54.3 66 43.9
TAR629G2291 Trochodendron aralioides HOM05D000235 ORTHO05D000147 6.2e-06 54.3 65 46.2
CANSAT25G3243 Cannabis sativa HOM05D000235 ORTHO05D000147 8.2e-06 53.9 105 44.8
Cfa008542 Carpinus fangiana HOM05D000235 ORTHO05D000147 8.2e-06 53.9 66 42.4
CiPaw.01G027500 Carya illinoinensis HOM05D000235 ORTHO05D000147 8.2e-06 53.9 65 46.2
CiPaw.01G027600 Carya illinoinensis HOM05D000235 ORTHO05D000147 8.2e-06 53.9 65 46.2
Ciclev10003959m.g Citrus clementina HOM05D000235 ORTHO05D000147 8.2e-06 53.9 87 37.9
Eucgr.H01953 Eucalyptus grandis HOM05D000235 ORTHO05D000147 8.2e-06 53.9 66 45.5
MD04G1044400 Malus domestica HOM05D000235 ORTHO05D000147 8.2e-06 53.9 68 42.6
MD14G1163500 Malus domestica HOM05D000235 ORTHO05D000147 8.2e-06 53.9 65 41.5
Manes.18G026650 Manihot esculenta HOM05D000235 ORTHO05D000147 8.2e-06 53.9 66 40.9
Peaxi162Scf00071g00138 Petunia axillaris HOM05D000235 ORTHO05D000147 8.2e-06 53.9 71 42.3
Potri.014G038000 Populus trichocarpa HOM05D000235 ORTHO05D000147 8.2e-06 53.9 102 39.2
Potri.014G038100 Populus trichocarpa HOM05D000235 ORTHO05D000147 8.2e-06 53.9 102 39.2
PGR031G2065 Punica granatum HOM05D000235 ORTHO05D043693 8.2e-06 53.9 65 44.6
PGR083G2610 Punica granatum HOM05D000235 ORTHO05D000147 8.2e-06 53.9 72 41.7
Rhsim06G0040300 Rhododendron simsii HOM05D000235 ORTHO05D000147 8.2e-06 53.9 70 41.4
TWI34G1218 Tripterygium wilfordii HOM05D000235 ORTHO05D000147 8.2e-06 53.9 66 45.5
TAR628G0679 Trochodendron aralioides HOM05D000235 ORTHO05D000147 8.2e-06 53.9 66 45.5


User provided reference genes

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