Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 9.6e-83 310.1 152 100.0
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 3.6e-61 238.4 136 80.1
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 6.1e-61 237.7 136 82.4
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.9e-59 232.6 136 80.9
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 5.7e-59 231.1 136 77.9
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 7.4e-59 230.7 141 78.7
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 7.4e-59 230.7 136 80.9
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 1.3e-58 229.9 141 78.7
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 1.3e-58 229.9 133 78.9
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 1.6e-58 229.6 135 78.5
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.6e-58 229.6 135 78.5
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.6e-58 229.6 135 78.5
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 3.7e-58 228.4 135 77.0
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 3.7e-58 228.4 136 79.4
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 4.8e-58 228.0 136 77.2
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 6.3e-58 227.6 136 74.3
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 1.1e-57 226.9 137 79.6
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 3.1e-57 225.3 136 77.2
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 4.1e-57 224.9 137 76.6
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 5.3e-57 224.6 136 73.5
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 5.3e-57 224.6 136 72.8
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 6.9e-57 224.2 136 77.9
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 9.0e-57 223.8 135 75.6
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 9.0e-57 223.8 138 77.5
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 1.2e-56 223.4 136 77.2
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.2e-56 223.4 136 76.5
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 2.0e-56 222.6 134 75.4
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 4.5e-56 221.5 136 75.7
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 4.5e-56 221.5 136 76.5
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 5.9e-56 221.1 137 74.5
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 5.9e-56 221.1 135 75.6
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.3e-55 219.9 131 79.4
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 2.9e-55 218.8 136 74.3
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 3.8e-55 218.4 136 73.5
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 3.8e-55 218.4 137 74.5
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 5.0e-55 218.0 135 76.3
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 5.0e-55 218.0 135 76.3
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 5.0e-55 218.0 137 73.7
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 5.0e-55 218.0 136 73.5
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 6.5e-55 217.6 133 75.2
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 6.5e-55 217.6 137 74.5
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 8.5e-55 217.2 136 76.5
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 1.1e-54 216.9 132 77.3
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.4e-54 216.5 133 75.2
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.5e-54 215.7 137 74.5
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 5.5e-54 214.5 138 74.6
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 7.2e-54 214.2 136 75.7
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 7.2e-54 214.2 136 77.2
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 7.2e-54 214.2 136 71.3
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 1.6e-53 213.0 133 69.9
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 2.1e-53 212.6 135 74.1
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 2.1e-53 212.6 138 71.7
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 2.1e-53 212.6 138 71.7
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 3.6e-53 211.8 138 73.9
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 6.1e-53 211.1 133 73.7
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 6.1e-53 211.1 136 76.5
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 7.9e-53 210.7 136 70.6
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 1.8e-52 209.5 135 70.4
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 2.3e-52 209.1 136 69.9
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 3.0e-52 208.8 136 73.5
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 3.9e-52 208.4 139 71.2
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 1.1e-51 206.8 133 69.9
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 1.1e-51 206.8 135 74.1
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 1.1e-51 206.8 127 77.2
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 1.1e-51 206.8 127 77.2
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 1.5e-51 206.5 135 68.9
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 2.6e-51 205.7 136 69.9
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 2.6e-51 205.7 136 69.9
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 3.3e-51 205.3 136 69.1
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 3.3e-51 205.3 136 69.9
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 3.3e-51 205.3 139 71.2
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 4.4e-51 204.9 133 72.9
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 7.4e-51 204.1 136 69.1
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 1.7e-50 203.0 138 70.3
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 2.2e-50 202.6 119 80.7
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 2.2e-50 202.6 132 70.5
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.8e-50 202.2 119 79.8
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 3.7e-50 201.8 136 71.3
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 3.7e-50 201.8 138 71.7
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 4.8e-50 201.4 138 68.8
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 1.1e-49 200.3 136 69.1
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 1.1e-49 200.3 135 69.6
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 4.1e-49 198.4 137 67.9
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 4.1e-49 198.4 137 67.2
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 4.1e-49 198.4 137 67.2
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 5.3e-49 198.0 138 68.1
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 9.1e-49 197.2 119 75.6
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 9.1e-49 197.2 137 67.9
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 1.2e-48 196.8 136 69.9
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 3.4e-48 195.3 134 67.9
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 3.4e-48 195.3 119 74.8
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 3.4e-48 195.3 138 66.7
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 4.5e-48 194.9 137 67.2
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 1.3e-47 193.4 139 67.6
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 1.7e-47 193.0 106 82.1
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 2.2e-47 192.6 137 67.9
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 2.9e-47 192.2 124 75.0
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 2.9e-47 192.2 124 75.0
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 6.5e-47 191.0 124 75.0
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 8.5e-47 190.7 138 65.2
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 8.5e-47 190.7 135 65.9
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 1.6e-45 186.4 132 65.9
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 2.7e-45 185.7 137 63.5
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 2.7e-45 185.7 117 72.6
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 7.9e-45 184.1 130 69.2
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 7.9e-45 184.1 138 60.1
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 3.0e-44 182.2 116 75.0
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 3.9e-44 181.8 141 62.4
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 3.3e-43 178.7 139 61.9
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 4.4e-43 178.3 112 73.2
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 4.1e-41 171.8 109 73.4
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 2.2e-39 166.0 128 64.1
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 5.0e-39 164.9 136 58.8
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 4.2e-38 161.8 113 67.3
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 1.6e-37 159.8 86 90.7
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 4.8e-34 148.3 95 74.7
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 4.8e-34 148.3 129 51.9
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 6.3e-34 147.9 129 51.9
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 8.2e-34 147.5 125 50.4
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 8.2e-34 147.5 92 75.0
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 4.1e-33 145.2 111 64.0
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 5.3e-33 144.8 120 53.3
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 9.1e-33 144.1 106 61.3
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 5.9e-32 141.4 115 54.8
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 1.3e-31 140.2 116 51.7
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.1e-30 137.1 82 73.2
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 4.7e-29 131.7 84 69.0
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 4.8e-26 121.7 117 47.9
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 1.2e-21 107.1 90 58.9
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 4.5e-16 88.6 53 71.7
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 1.9e-14 83.2 89 53.9
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 2.0e-08 63.2 58 51.7
CsaV3_7G018800 Cucumis sativus L. HOM05D006058 ORTHO05D000001 1.9e-06 56.6 43 55.8


User provided reference genes

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