Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 0.0e+00 1195.6 592 100.0
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 9.2e-198 694.1 600 59.8
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 2.3e-196 689.5 600 59.7
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 3.1e-193 679.1 593 59.4
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 4.0e-193 678.7 601 59.6
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 5.2e-193 678.3 593 59.4
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 2.2e-191 672.9 605 58.8
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 3.2e-190 669.1 603 59.0
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 1.2e-189 667.2 615 58.4
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 2.3e-188 662.9 598 58.5
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 3.9e-188 662.1 597 57.6
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 8.6e-188 661.0 605 57.5
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 2.5e-187 659.4 499 65.5
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 2.5e-187 659.4 589 59.3
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 2.4e-185 652.9 600 58.3
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 2.4e-185 652.9 640 53.9
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 4.0e-185 652.1 602 58.3
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 4.4e-184 648.7 604 58.1
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 1.4e-182 643.7 603 57.5
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 4.2e-182 642.1 642 53.6
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 4.2e-182 642.1 606 57.1
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 2.1e-181 639.8 618 55.5
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 2.5e-179 632.9 591 57.7
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 2.5e-179 632.9 598 55.9
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 7.3e-179 631.3 597 55.4
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 2.8e-178 629.4 605 53.7
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 1.4e-177 627.1 608 55.4
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 1.5e-176 623.6 602 55.6
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 4.9e-175 618.6 599 54.4
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 7.1e-174 614.8 603 53.7
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.0e-172 610.9 602 54.5
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 8.7e-172 607.8 609 54.7
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 9.6e-171 604.4 662 49.1
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.2e-168 597.4 611 52.2
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.2e-168 597.4 598 54.3
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 3.4e-168 595.9 617 52.5
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 8.4e-167 591.3 599 52.6
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 1.4e-166 590.5 580 55.2
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 2.4e-166 589.7 606 51.7
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 3.2e-166 589.3 604 53.5
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 1.0e-164 584.3 611 52.2
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.8e-164 583.6 602 52.0
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 3.0e-164 582.8 609 51.9
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 1.5e-163 580.5 604 51.7
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 1.9e-163 580.1 590 51.9
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.9e-163 580.1 604 52.5
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 9.6e-163 577.8 611 52.4
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.6e-162 577.0 604 52.3
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 3.7e-162 575.9 600 51.3
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 8.1e-162 574.7 605 52.2
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 2.4e-161 573.2 607 50.6
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 6.9e-161 571.6 601 52.4
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 3.4e-160 569.3 610 51.5
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.0e-159 567.8 604 50.7
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 4.9e-159 565.5 599 50.8
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 1.1e-158 564.3 601 51.1
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 1.9e-158 563.5 600 51.3
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 2.5e-158 563.1 594 50.3
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 3.2e-158 562.8 640 48.8
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 4.2e-158 562.4 604 51.0
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 1.2e-157 560.8 660 47.9
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 3.5e-157 559.3 684 45.6
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 6.0e-157 558.5 641 49.0
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 2.3e-156 556.6 589 50.6
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 4.5e-152 542.3 598 50.8
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 5.8e-152 542.0 598 51.3
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 1.0e-151 541.2 600 49.2
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 8.4e-151 538.1 612 50.0
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 2.5e-150 536.6 478 57.7
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 5.5e-150 535.4 478 57.9
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 2.6e-144 516.5 622 46.9
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 1.0e-140 504.6 641 46.0
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.4e-140 504.2 597 47.2
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 1.4e-137 494.2 598 47.2
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 2.0e-136 490.3 593 45.0
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 3.4e-136 489.6 596 45.1
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 4.7e-133 479.2 536 50.6
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 6.1e-133 478.8 597 46.1
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 2.6e-131 473.4 487 52.0
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 3.3e-131 473.0 622 45.7
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 3.3e-131 473.0 628 45.4
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 8.2e-130 468.4 611 45.3
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 7.0e-129 465.3 569 48.7
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 1.6e-120 437.6 532 46.2
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 7.2e-118 428.7 495 50.3
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 4.0e-108 396.4 259 71.0
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 5.2e-108 396.0 484 49.4
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 1.5e-107 394.4 493 44.6
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 3.5e-96 356.7 222 73.9
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 3.9e-95 353.2 222 73.9
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 5.6e-94 349.4 497 42.5
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 2.1e-93 347.4 224 72.3
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 3.6e-93 346.7 471 38.2
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 3.2e-89 333.6 377 50.1
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 1.7e-82 311.2 204 71.1
MD08G1159000 Malus domestica HOM05D001245 ORTHO05D004475 5.4e-81 306.2 374 46.0
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 9.2e-81 305.4 199 68.8
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 1.5e-78 298.1 467 34.5
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 5.6e-78 296.2 495 41.2
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 1.4e-76 291.6 185 69.7
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 3.1e-76 290.4 490 39.2
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 2.2e-74 284.3 191 66.5
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.7e-74 283.5 180 70.0
VMungo0647G1057 Vigna mungo HOM05D001245 ORTHO05D004475 1.4e-68 265.0 368 44.6
RcHm_v2.0_Chr6g0296681 Rosa chinensis HOM05D001245 ORTHO05D004475 1.7e-63 248.1 343 43.1
Eucgr.F03841 Eucalyptus grandis HOM05D001245 ORTHO05D004475 1.3e-61 241.9 339 43.4
CiPaw.16G022900 Carya illinoinensis HOM05D001245 ORTHO05D004475 1.0e-55 222.2 314 43.9
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 1.5e-54 218.4 155 67.1
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.4e-52 211.8 200 53.5
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 2.4e-52 211.1 355 36.1
Sopen01g030190 Solanum pennellii HOM05D001245 ORTHO05D004475 2.4e-49 201.1 334 42.2
SHI09212 Sapria himalayana HOM05D000105 ORTHO05D000023 4.2e-49 200.3 392 37.0
ATR0561G228 Amborella trichopoda HOM05D001245 ORTHO05D004475 7.6e-43 179.5 345 38.6
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 1.9e-41 174.9 266 42.5
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.1e-40 171.4 123 65.9
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 6.9e-36 156.4 350 30.3
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 1.7e-34 151.8 98 71.4
CsaV3_1G017340 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-33 149.1 132 52.3
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.9e-30 138.3 103 62.1
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.5e-30 137.9 100 64.0
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.8e-28 131.7 102 59.8
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 8.5e-26 122.9 106 50.9
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 7.4e-22 109.8 194 32.0
CsaV3_2G000050 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.3e-21 109.0 175 38.3
CsaV3_UNG169320 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.3e-21 109.0 175 38.3
MCO14G357 Micromonas commoda HOM05D001245 ORTHO05D004475 1.0e-18 99.4 195 30.8
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.5e-18 96.7 60 66.7
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.5e-18 96.7 60 68.3
Medtr7g091020 Medicago truncatula HOM05D016289 ORTHO05D019268 2.1e-16 91.7 83 48.2
CsaV3_UNG224680 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.8e-13 80.5 122 39.3
CsaV3_UNG224640 Cucumis sativus L. HOM05D001245 ORTHO05D004475 9.1e-12 76.3 122 38.5
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 3.5e-11 74.3 47 68.1
PRCOL_00000968 Prasinoderma coloniale HOM05D001245 ORTHO05D004475 2.2e-10 71.6 279 24.7
CsaV3_5G018940 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.5e-09 68.2 52 61.5
CsaV3_5G018960 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.6e-08 65.5 64 50.0
Cre12.g515900 Chlamydomonas reinhardtii HOM05D001245 ORTHO05D004475 1.4e-07 62.4 179 24.0
Psat0s9845g0040 Pisum sativum HOM05D001245 ORTHO05D004475 3.0e-07 61.2 61 55.7
Psat3g039720 Pisum sativum HOM05D001235 ORTHO05D004475 3.0e-07 61.2 61 55.7
Medtr7g091010 Medicago truncatula HOM05D001245 ORTHO05D004475 6.7e-07 60.1 39 71.8
Eucgr.B02057 Eucalyptus grandis HOM05D001245 ORTHO05D004475 1.5e-06 58.9 98 32.7
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.5e-06 58.9 100 36.0
Solyc06g009680.4 Solanum lycopersicum HOM05D004995 ORTHO05D006034 1.5e-06 58.9 206 23.8
Sopen06g004320 Solanum pennellii HOM05D004995 ORTHO05D006034 1.5e-06 58.9 206 23.8
HPP92_002159 Vanilla planifolia HOM05D001245 ORTHO05D004475 3.3e-06 57.8 40 62.5
FAN18G1671 Fragaria x ananassa HOM05D004995 ORTHO05D006034 4.4e-06 57.4 303 24.1
Potri.014G122400 Populus trichocarpa HOM05D004995 ORTHO05D006034 9.7e-06 56.2 220 23.2


User provided reference genes

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