Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 2.3e-75 285.8 178 100.0
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.4e-45 186.0 178 61.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.2e-44 183.7 183 67.8
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.2e-44 183.7 178 64.0
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 2.1e-44 183.0 185 59.5
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 2.1e-44 183.0 153 65.4
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 2.7e-44 182.6 185 58.9
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 7.9e-44 181.0 192 60.9
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 6.7e-43 177.9 151 67.5
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.5e-42 176.0 183 58.5
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 3.3e-42 175.6 178 59.0
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 4.3e-42 175.3 199 55.3
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.3e-41 173.7 154 74.0
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.3e-41 173.7 179 63.1
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.6e-41 173.3 151 68.2
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 2.1e-41 172.9 188 65.4
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.8e-41 172.6 179 60.3
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 6.2e-41 171.4 191 62.3
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 8.2e-41 171.0 195 57.4
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 8.2e-41 171.0 185 67.0
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 8.2e-41 171.0 189 61.4
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.8e-40 169.9 136 65.4
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 5.3e-40 168.3 185 60.0
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 5.3e-40 168.3 189 65.6
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 9.0e-40 167.5 185 62.7
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 9.0e-40 167.5 178 61.8
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.2e-39 167.2 184 57.6
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.2e-39 167.2 177 55.9
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.5e-39 166.8 185 62.2
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.5e-39 166.8 178 64.0
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.5e-39 166.8 145 69.0
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.0e-39 166.4 189 60.8
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 2.6e-39 166.0 139 73.4
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.6e-39 166.0 189 61.9
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 3.4e-39 165.6 177 67.8
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 3.4e-39 165.6 178 60.7
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.5e-39 165.2 185 54.1
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 5.8e-39 164.9 151 70.2
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.8e-39 164.9 180 63.3
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 5.8e-39 164.9 183 66.1
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 5.8e-39 164.9 183 59.0
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 7.6e-39 164.5 176 63.6
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 7.6e-39 164.5 147 69.4
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 7.6e-39 164.5 176 56.2
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.0e-38 164.1 189 59.8
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 1.3e-38 163.7 191 64.4
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.3e-38 163.7 180 64.4
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 1.7e-38 163.3 152 69.7
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.7e-38 163.3 179 55.3
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.2e-38 162.9 177 62.7
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.2e-38 162.9 178 62.9
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 2.2e-38 162.9 151 63.6
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 2.2e-38 162.9 178 62.9
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 2.9e-38 162.5 192 61.5
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.9e-38 162.5 163 68.1
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 2.9e-38 162.5 187 55.1
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 4.9e-38 161.8 157 65.0
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 4.9e-38 161.8 187 64.2
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 6.5e-38 161.4 183 66.1
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 8.4e-38 161.0 178 60.1
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.1e-37 160.6 186 61.8
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.1e-37 160.6 178 64.0
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.1e-37 160.6 140 70.0
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.1e-37 160.6 148 60.1
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.4e-37 160.2 193 64.2
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.9e-37 159.8 163 57.1
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.9e-37 159.8 181 65.7
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.5e-37 159.5 195 63.1
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.5e-37 159.5 195 63.1
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.5e-37 159.5 137 62.0
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 4.2e-37 158.7 136 71.3
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 7.1e-37 157.9 150 68.0
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 7.1e-37 157.9 140 67.9
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 7.1e-37 157.9 137 61.3
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 7.1e-37 157.9 197 53.3
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 9.3e-37 157.5 159 65.4
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 9.3e-37 157.5 168 62.5
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-36 157.1 179 62.0
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.6e-36 156.8 178 60.1
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.6e-36 156.8 189 58.7
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 2.1e-36 156.4 177 61.0
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 2.1e-36 156.4 159 64.8
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.1e-36 156.4 178 58.4
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.7e-36 156.0 143 72.7
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.6e-36 155.2 176 61.4
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.0e-35 154.1 183 63.4
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.3e-35 153.7 179 59.2
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.3e-35 153.7 87 86.2
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.3e-35 153.7 183 61.7
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.8e-35 153.3 179 64.8
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.8e-35 153.3 153 58.2
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 2.3e-35 152.9 179 64.2
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 3.0e-35 152.5 186 60.8
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.0e-35 152.5 136 67.6
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 3.0e-35 152.5 157 64.3
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 5.1e-35 151.8 198 57.1
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 6.7e-35 151.4 192 51.6
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 8.7e-35 151.0 148 64.9
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.1e-34 150.6 187 52.9
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.1e-34 150.6 153 54.9
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.5e-34 150.2 175 60.6
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 3.3e-34 149.1 180 61.7
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 3.3e-34 149.1 176 56.2
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 4.3e-34 148.7 179 64.2
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 4.3e-34 148.7 168 59.5
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 5.7e-34 148.3 176 61.4
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 5.7e-34 148.3 176 61.4
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 7.4e-34 147.9 179 63.7
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 7.4e-34 147.9 196 55.6
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 9.7e-34 147.5 176 56.8
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.3e-33 147.1 176 59.1
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.3e-33 147.1 191 56.0
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 4.8e-33 145.2 180 61.7
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.8e-33 145.2 180 59.4
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 8.2e-33 144.4 178 64.0
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 8.2e-33 144.4 168 65.5
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.1e-32 144.1 184 56.5
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.4e-32 143.7 175 56.6
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 5.3e-32 141.7 85 78.8
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 2.0e-31 139.8 124 61.3
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 2.2e-30 136.3 75 89.3
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 4.2e-29 132.1 195 51.3
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 5.5e-29 131.7 191 56.5
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 4.6e-28 128.6 163 58.9
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 4.6e-28 128.6 176 60.2
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 7.4e-26 121.3 70 80.0
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 1.4e-24 117.1 69 76.8
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 2.6e-23 112.8 86 65.1
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 5.9e-23 111.7 189 53.4
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 6.1e-20 101.7 175 52.6
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.4e-19 100.5 80 62.5
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 2.3e-19 99.8 63 77.8
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 5.1e-19 98.6 102 54.9
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 6.7e-19 98.2 68 75.0
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 8.8e-19 97.8 111 64.0
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.5e-18 97.1 111 69.4
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 4.4e-18 95.5 86 53.5
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 5.7e-18 95.1 146 60.3
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.7e-17 93.6 82 56.1
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 6.9e-16 88.2 171 52.6
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.9e-14 82.8 47 83.0
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 3.9e-11 72.4 138 52.9
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 5.7e-10 68.6 67 52.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 9.1e-08 61.2 39 66.7
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 7.7e-07 58.2 133 48.1
unitig_749.g13910 Utricularia gibba HOM05D005519 ORTHO05D006423 2.2e-06 56.6 89 44.9


User provided reference genes

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