Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 2.9e-140 501.9 256 100.0
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 5.6e-83 311.6 229 67.7
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.2e-82 310.5 229 67.2
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.6e-82 308.9 229 67.2
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 5.8e-80 301.6 250 61.2
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.7e-79 300.1 244 61.1
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.1e-78 297.4 238 65.5
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.1e-78 297.4 232 65.1
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 5.4e-78 295.0 229 63.8
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 9.2e-78 294.3 222 68.9
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.6e-77 293.5 229 65.1
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.6e-77 293.5 229 62.0
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 3.0e-76 289.3 239 62.3
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.5e-75 287.0 236 64.4
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 9.5e-75 284.3 238 61.3
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 3.6e-74 282.3 229 60.3
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.8e-73 280.0 240 59.2
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 3.1e-73 279.3 240 58.8
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 4.0e-73 278.9 242 58.7
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 3.4e-72 275.8 238 60.5
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 4.4e-72 275.4 232 61.2
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 4.4e-72 275.4 239 59.0
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 7.5e-72 274.6 245 59.2
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 7.5e-72 274.6 242 59.5
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 9.8e-72 274.2 236 59.7
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 9.8e-72 274.2 233 60.1
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.7e-71 273.5 232 59.5
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 2.9e-71 272.7 239 54.4
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 3.7e-71 272.3 241 58.1
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 3.7e-71 272.3 238 59.2
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.9e-70 270.0 248 56.5
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.9e-70 270.0 238 59.2
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.9e-70 270.0 237 55.3
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.9e-70 270.0 237 55.3
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 2.4e-70 269.6 230 59.1
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 5.4e-70 268.5 245 58.8
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 5.4e-70 268.5 237 55.3
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 7.0e-70 268.1 237 58.2
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 7.0e-70 268.1 230 58.7
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 9.2e-70 267.7 253 53.8
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.2e-69 267.3 227 56.8
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.5e-69 265.8 239 56.9
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.5e-69 265.8 232 58.6
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 4.6e-69 265.4 240 56.7
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 6.6e-68 261.5 230 53.5
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.9e-67 260.0 266 50.4
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 5.6e-67 258.5 229 53.7
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 6.2e-66 255.0 192 64.6
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 6.2e-66 255.0 200 60.5
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 2.3e-65 253.1 200 63.5
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.2e-65 251.9 233 54.9
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 1.2e-64 250.8 196 64.8
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.5e-64 250.4 227 54.2
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.4e-62 243.0 253 51.4
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 2.4e-62 243.0 198 59.1
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 3.2e-62 242.7 234 51.7
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 5.4e-62 241.9 253 51.0
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.2e-61 240.7 243 51.4
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 2.1e-61 240.0 202 61.4
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 6.0e-61 238.4 234 52.6
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 5.1e-60 235.3 195 61.0
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 8.6e-60 234.6 235 49.8
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 8.6e-60 234.6 262 48.9
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.1e-59 234.2 253 50.2
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.5e-59 233.8 253 50.6
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.5e-59 233.8 244 51.6
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 1.5e-59 233.8 253 53.4
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.9e-59 233.4 230 49.6
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 1.9e-59 233.4 217 56.7
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 4.3e-59 232.3 244 47.5
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 5.6e-59 231.9 253 50.6
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 5.6e-59 231.9 253 50.6
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 5.6e-59 231.9 229 51.5
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 7.3e-59 231.5 250 50.0
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 9.5e-59 231.1 219 52.5
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.2e-58 230.7 253 49.8
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.6e-58 230.3 195 57.4
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 3.6e-58 229.2 241 49.8
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.6e-58 229.2 197 55.8
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.8e-57 226.9 242 51.7
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 3.1e-57 226.1 239 49.4
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 5.8e-56 221.9 237 50.2
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 7.1e-54 214.9 239 47.3
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 2.1e-53 213.4 184 56.5
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.5e-53 212.6 251 48.2
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.3e-52 210.7 241 46.5
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 8.7e-52 208.0 199 56.8
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.5e-51 207.2 286 43.0
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.3e-51 206.1 247 43.3
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.6e-50 203.8 195 50.8
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 3.1e-49 199.5 232 44.8
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 4.0e-49 199.1 237 43.0
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-48 197.6 235 44.7
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.4e-46 190.7 234 44.9
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.2e-45 187.6 236 44.1
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.6e-45 187.2 194 53.1
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.0e-44 184.5 236 43.6
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.9e-43 180.3 158 57.6
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-43 179.9 229 41.5
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-43 179.9 229 40.2
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 3.6e-42 176.0 211 46.4
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.2e-42 175.3 239 40.6
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.8e-41 173.7 233 41.2
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.3e-39 167.5 270 41.5
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.7e-39 167.2 236 41.5
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 2.4e-38 163.3 245 42.4
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-36 157.5 232 39.2
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-35 153.3 225 41.8
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 7.4e-35 151.8 224 40.2
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 3.1e-33 146.4 181 47.5
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 6.9e-33 145.2 225 39.1
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 5.8e-32 142.1 115 56.5
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 7.6e-32 141.7 198 39.9
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 7.1e-30 135.2 157 49.0
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.6e-29 134.0 109 58.7
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.7e-28 128.6 150 44.7
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 6.7e-28 128.6 118 54.2
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 4.8e-26 122.5 109 55.0
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 3.1e-25 119.8 200 38.0
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 3.8e-23 112.8 107 51.4
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.9e-22 110.5 163 42.9
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 2.3e-20 103.6 106 49.1
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 1.9e-19 100.5 107 46.7
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 9.7e-19 98.2 118 46.6
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 9.7e-19 98.2 106 45.3
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 2.8e-18 96.7 109 46.8
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 2.8e-18 96.7 140 42.1
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 7.7e-16 88.6 126 42.9
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 3.8e-15 86.3 119 44.5
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.9e-14 84.0 71 59.2
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-11 74.7 71 46.5
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 3.3e-11 73.2 218 25.7
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.3e-11 72.8 67 49.3
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-08 64.3 106 37.7
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 2.9e-07 60.1 101 35.6
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.9e-06 57.4 44 61.4


User provided reference genes

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