Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 8.9e-151 537.0 280 100.0
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.2e-46 191.0 290 44.8
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.6e-46 190.7 290 44.5
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 2.0e-41 173.7 292 42.1
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 4.9e-40 169.1 177 53.7
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.9e-39 167.2 291 38.8
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.7e-38 163.3 194 51.0
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 6.0e-38 162.2 189 47.6
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.0e-37 161.4 290 41.0
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.7e-37 160.6 288 38.5
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 5.0e-37 159.1 336 36.6
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 5.0e-37 159.1 299 37.1
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 2.5e-36 156.8 361 34.9
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.5e-36 156.8 195 47.2
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 3.3e-36 156.4 322 37.9
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 3.3e-36 156.4 238 44.1
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 5.6e-36 155.6 314 37.6
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 5.6e-36 155.6 229 42.4
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 7.3e-36 155.2 291 38.8
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 7.3e-36 155.2 189 45.5
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.2e-35 154.5 215 46.5
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.8e-35 153.3 244 42.2
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 2.8e-35 153.3 269 42.4
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 4.7e-35 152.5 275 38.2
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 1.1e-34 151.4 217 47.9
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 1.1e-34 151.4 307 36.2
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.8e-34 150.6 248 41.5
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.1e-34 149.8 140 57.1
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 4.0e-34 149.4 258 39.1
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 5.2e-34 149.1 174 49.4
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 5.2e-34 149.1 265 40.0
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 5.2e-34 149.1 332 36.4
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 6.8e-34 148.7 182 48.9
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.5e-33 147.5 176 48.3
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 2.0e-33 147.1 188 47.9
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 2.6e-33 146.7 173 50.3
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 3.4e-33 146.4 217 46.5
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 3.4e-33 146.4 175 48.0
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 3.4e-33 146.4 156 52.6
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 5.8e-33 145.6 307 37.5
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 7.5e-33 145.2 241 41.5
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 9.8e-33 144.8 250 42.8
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 9.8e-33 144.8 319 36.7
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 9.8e-33 144.8 182 46.2
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 1.3e-32 144.4 173 49.7
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 2.2e-32 143.7 176 47.2
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.9e-32 143.3 250 42.4
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 6.4e-32 142.1 280 38.2
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 6.4e-32 142.1 226 41.6
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 8.3e-32 141.7 226 44.7
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.1e-31 141.4 147 53.7
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.4e-31 141.0 281 36.7
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 1.9e-31 140.6 159 50.9
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.9e-31 140.6 143 53.1
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 7.1e-31 138.7 140 50.0
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 7.1e-31 138.7 157 51.0
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.2e-30 137.9 218 43.1
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.2e-30 137.9 240 40.0
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 1.6e-30 137.5 218 43.1
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.6e-30 137.5 152 51.3
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 4.6e-30 136.0 139 49.6
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 4.6e-30 136.0 148 49.3
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 4.6e-30 136.0 154 48.1
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 4.6e-30 136.0 277 34.3
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.0e-29 134.8 139 50.4
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 1.0e-29 134.8 242 40.5
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.0e-29 134.8 271 37.3
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.7e-29 134.0 242 37.2
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 1.7e-29 134.0 255 38.0
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.7e-29 134.0 251 39.0
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.7e-29 134.0 366 32.2
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 2.3e-29 133.7 139 53.2
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 3.9e-29 132.9 146 46.6
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.9e-29 132.9 251 38.2
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 3.9e-29 132.9 270 37.0
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 5.1e-29 132.5 252 36.9
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 6.6e-29 132.1 226 42.0
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 8.6e-29 131.7 256 40.2
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.1e-28 131.3 304 33.2
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.1e-28 131.3 281 35.6
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.1e-28 131.3 276 34.8
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.9e-28 130.6 148 48.6
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 4.3e-28 129.4 148 48.0
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 5.6e-28 129.0 243 39.1
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 5.6e-28 129.0 180 43.3
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.2e-27 127.9 239 39.7
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.6e-27 127.5 223 38.1
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.1e-27 127.1 261 38.3
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 3.6e-27 126.3 262 37.8
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 8.1e-27 125.2 139 46.8
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 3.1e-26 123.2 132 48.5
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 3.1e-26 123.2 156 46.2
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 3.1e-26 123.2 231 39.0
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 4.0e-26 122.9 251 35.1
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 5.2e-26 122.5 247 36.0
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 1.2e-25 121.3 140 42.9
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 4.4e-25 119.4 148 43.9
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.7e-24 117.5 138 42.0
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 2.2e-24 117.1 249 36.5
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 2.9e-24 116.7 141 42.6
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 2.9e-24 116.7 162 41.4
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 6.4e-24 115.5 133 42.9
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 2.7e-22 110.2 207 36.7
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 4.6e-22 109.4 191 41.4
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 3.9e-21 106.3 213 33.8
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 5.1e-21 105.9 139 43.2
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 1.1e-20 104.8 145 42.8
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.9e-20 104.0 311 31.2
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 3.3e-20 103.2 245 35.9
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 3.3e-20 103.2 274 28.8
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 5.6e-20 102.4 283 31.8
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 1.2e-19 101.3 144 42.4
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 1.1e-18 98.2 225 34.2
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 3.1e-18 96.7 280 30.0
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 5.2e-18 95.9 148 40.5
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 6.8e-18 95.5 232 34.9
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 2.0e-17 94.0 106 50.9
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.3e-16 91.3 280 29.3
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 2.1e-14 84.0 238 31.5
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 6.6e-13 79.0 289 28.7
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 6.6e-13 79.0 249 30.9
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.9e-12 77.4 145 40.7
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 5.6e-12 75.9 107 44.9
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 3.6e-11 73.2 321 27.4
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 4.4e-09 66.2 118 33.9
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 4.9e-08 62.8 235 29.4
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 8.4e-08 62.0 94 29.8
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 1.9e-07 60.8 62 51.6
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 1.9e-07 60.8 195 28.2
Pp3c19_14230 Physcomitrium patens HOM05D000136 ORTHO05D000080 3.2e-07 60.1 113 31.9
CSS0029906 Camellia sinensis var. sinensis HOM05D000136 ORTHO05D000080 7.1e-07 58.9 106 27.4
COL.COLO4_18495 Corchorus olitorius HOM05D000136 ORTHO05D000080 7.1e-07 58.9 122 29.5
AL2G16910 Arabidopsis lyrata HOM05D000136 ORTHO05D000080 9.3e-07 58.5 92 34.8
Os12g0165200 Oryza sativa ssp. japonica HOM05D005242 ORTHO05D006778 9.3e-07 58.5 132 24.2
SEGI_16171 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 9.3e-07 58.5 94 34.0
Haze_09969 Corylus avellana HOM05D000136 ORTHO05D000080 1.2e-06 58.2 92 33.7
AagrBONN_evm.TU.Sc2ySwM_117.3691 Anthoceros agrestis HOM05D000136 ORTHO05D000080 1.6e-06 57.8 92 32.6
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.6e-06 57.8 109 35.8
SalBow4G0084 Salvia bowleyana HOM05D000136 ORTHO05D000080 1.6e-06 57.8 100 35.0
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 1.6e-06 57.8 73 41.1
Carub.0002s0540 Capsella rubella HOM05D000136 ORTHO05D000080 2.1e-06 57.4 92 32.6
Dinv20919 Davidia involucrata HOM05D000136 ORTHO05D000080 2.1e-06 57.4 106 32.1
Dinv21025 Davidia involucrata HOM05D000136 ORTHO05D000080 2.1e-06 57.4 106 32.1
Nn1g06075 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.1e-06 57.4 49 61.2
CDE05G1383 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 2.7e-06 57.0 100 32.0
Manes.16G048700 Manihot esculenta HOM05D000136 ORTHO05D000080 2.7e-06 57.0 127 27.6
Actinidia15624 Actinidia chinensis HOM05D000136 ORTHO05D000080 3.5e-06 56.6 127 26.0
Sopen01g045370 Solanum pennellii HOM05D000136 ORTHO05D000080 3.5e-06 56.6 92 34.8
Pp3c8_6770 Physcomitrium patens HOM05D000136 ORTHO05D000080 4.6e-06 56.2 95 34.7
MSTRG.241 Avicennia marina HOM05D000136 ORTHO05D000080 6.0e-06 55.8 92 31.5
CBR_g48901 Chara braunii HOM05D000136 ORTHO05D000080 6.0e-06 55.8 125 28.0
Rhsim11G0117500 Rhododendron simsii HOM05D000136 ORTHO05D000080 6.0e-06 55.8 109 27.5
CANSAT56G1765 Cannabis sativa HOM05D000136 ORTHO05D000080 7.9e-06 55.5 108 25.0
Manes.02G186800 Manihot esculenta HOM05D000136 ORTHO05D000080 7.9e-06 55.5 107 28.0
Zm00001eb112330 Zea mays HOM05D000136 ORTHO05D000080 7.9e-06 55.5 92 28.3


User provided reference genes

Program Settings