Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.8e-67 259.2 141 100.0
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 6.4e-57 224.2 141 84.4
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 6.4e-57 224.2 141 85.8
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.9e-56 222.6 141 85.1
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.9e-56 222.6 141 83.7
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 3.2e-56 221.9 141 82.3
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.6e-55 219.5 137 83.2
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 2.7e-55 218.8 139 81.3
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.7e-55 218.8 141 81.6
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 3.5e-55 218.4 141 80.1
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 3.5e-55 218.4 141 80.1
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 4.6e-55 218.0 141 80.1
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 7.9e-55 217.2 141 80.1
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.8e-54 216.1 139 80.6
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.8e-54 216.1 141 78.7
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 2.3e-54 215.7 139 79.9
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 3.0e-54 215.3 140 80.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 3.9e-54 214.9 141 80.1
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.1e-54 214.5 141 81.6
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.5e-53 213.0 138 77.5
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 1.5e-53 213.0 138 79.7
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.9e-53 212.6 140 77.9
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.9e-53 212.6 141 78.0
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.5e-53 212.2 138 82.6
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.5e-53 212.2 140 77.1
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 3.3e-53 211.8 140 77.1
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 4.3e-53 211.5 140 77.1
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 5.6e-53 211.1 140 77.1
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 5.6e-53 211.1 141 78.0
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 5.6e-53 211.1 141 78.0
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 7.4e-53 210.7 141 76.6
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 7.4e-53 210.7 141 75.2
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 7.4e-53 210.7 141 73.8
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-52 209.9 140 76.4
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-52 209.9 141 77.3
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.6e-52 209.5 141 76.6
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.6e-52 209.5 141 77.3
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.6e-52 209.5 141 77.3
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 2.1e-52 209.1 141 78.0
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.1e-52 209.1 141 78.7
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.8e-52 208.8 136 79.4
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.6e-52 208.4 141 77.3
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.6e-52 208.4 141 78.0
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.8e-52 208.0 141 76.6
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 6.2e-52 207.6 137 78.8
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 6.2e-52 207.6 141 76.6
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 6.2e-52 207.6 137 79.6
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 6.2e-52 207.6 141 75.9
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.1e-52 207.2 140 77.1
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.1e-51 206.8 141 77.3
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-51 206.8 140 77.1
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.4e-51 206.5 141 80.9
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.4e-51 206.5 141 78.0
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.4e-51 206.5 138 76.8
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.8e-51 206.1 141 76.6
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.8e-51 206.1 137 79.6
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.4e-51 205.7 140 76.4
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.4e-51 205.7 140 76.4
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 2.4e-51 205.7 140 76.4
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-51 205.7 140 77.1
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 3.1e-51 205.3 140 76.4
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.9e-51 204.1 140 75.7
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 6.9e-51 204.1 141 75.2
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.9e-51 204.1 141 75.9
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 9.0e-51 203.8 171 66.7
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 9.0e-51 203.8 139 74.8
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 9.0e-51 203.8 141 76.6
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.2e-50 203.4 141 72.3
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.5e-50 203.0 139 79.1
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.5e-50 203.0 140 76.4
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.5e-50 203.0 141 76.6
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 2.0e-50 202.6 140 73.6
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 2.0e-50 202.6 140 73.6
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.6e-50 202.2 140 73.6
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.6e-50 202.2 140 73.6
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.6e-50 202.2 140 73.6
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 3.4e-50 201.8 140 72.9
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.4e-50 201.8 140 74.3
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.4e-50 201.8 140 73.6
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.4e-50 201.8 140 74.3
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 4.5e-50 201.4 140 75.0
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 7.6e-50 200.7 140 72.9
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 7.6e-50 200.7 140 73.6
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 9.9e-50 200.3 141 74.5
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.3e-49 199.9 140 72.9
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.3e-49 199.9 140 72.9
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-49 199.9 140 74.3
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.7e-49 199.5 141 74.5
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 3.8e-49 198.4 141 72.3
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 4.9e-49 198.0 141 74.5
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.1e-48 196.8 141 74.5
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 3.2e-48 195.3 146 69.9
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.5e-48 194.5 141 70.9
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 5.5e-48 194.5 141 72.3
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 7.1e-48 194.1 135 73.3
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.7e-47 192.2 139 71.9
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 3.5e-47 191.8 150 67.3
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 4.6e-47 191.4 180 60.6
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.0e-47 191.0 140 72.9
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-46 188.7 140 71.4
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 6.7e-46 187.6 115 83.5
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-45 186.4 140 71.4
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 3.3e-45 185.3 180 59.4
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 4.3e-45 184.9 114 83.3
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 4.3e-45 184.9 190 54.7
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 5.6e-45 184.5 206 53.9
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 4.8e-44 181.4 114 82.5
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 6.2e-44 181.0 141 70.9
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 8.1e-44 180.6 151 64.9
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.1e-43 180.3 114 79.8
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.4e-43 179.9 124 71.0
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.8e-43 179.5 211 51.7
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 3.1e-43 178.7 117 78.6
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 4.0e-43 178.3 113 79.6
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 6.9e-43 177.6 114 79.8
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-42 176.0 114 79.8
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-42 176.0 114 79.8
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-42 176.0 114 79.8
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 4.5e-42 174.9 114 76.3
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 5.8e-42 174.5 114 78.9
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 5.8e-42 174.5 114 78.9
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 7.6e-42 174.1 134 70.1
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.2e-41 172.6 114 75.4
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 4.9e-41 171.4 114 78.1
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 8.4e-41 170.6 114 77.2
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-40 170.2 114 77.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 5.5e-40 167.9 141 60.3
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 9.3e-40 167.2 114 75.4
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.2e-39 166.8 141 58.9
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.6e-39 166.4 227 46.7
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.1e-39 166.0 108 75.9
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.1e-39 166.0 108 75.9
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 7.9e-39 164.1 138 60.9
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-38 163.7 113 74.3
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 5.1e-38 161.4 138 61.6
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 3.1e-35 152.1 140 54.3
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 9.3e-32 140.6 150 54.0
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.6e-31 139.8 87 82.8
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 2.1e-31 139.4 87 83.9
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.2e-28 129.4 87 77.0
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 4.8e-28 128.3 89 78.7
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 3.4e-26 122.1 200 40.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 4.5e-26 121.7 136 53.7
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.7e-25 119.8 85 65.9
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 2.5e-24 115.9 133 44.4
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 4.2e-24 115.2 77 74.0
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.0e-22 110.5 70 80.0
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 3.0e-22 109.0 136 40.4
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-21 105.9 70 80.0
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-21 105.9 70 80.0
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-20 103.6 70 78.6
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 3.1e-19 99.0 64 79.7
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 3.1e-19 99.0 64 82.8
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 6.5e-17 91.3 59 71.2
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.1e-16 90.5 65 66.2
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.1e-15 86.3 65 61.5
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 2.0e-13 79.7 134 33.6
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.6e-13 79.3 60 71.7
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.4e-13 77.8 60 71.7
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.3e-12 77.0 48 77.1
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 6.3e-12 74.7 53 75.5
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.6e-10 70.1 53 62.3
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 2.6e-10 69.3 133 29.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.1e-08 63.9 48 68.8
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.1e-08 63.9 48 68.8


User provided reference genes

Program Settings