Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 3.1e-268 927.9 486 100.0
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.5e-182 643.3 429 74.4
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 2.0e-182 642.9 430 77.2
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 4.5e-182 641.7 479 67.4
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 6.4e-181 637.9 429 73.7
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 6.4e-181 637.9 429 70.9
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 6.0e-179 631.3 423 73.3
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 1.3e-178 630.2 427 71.2
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.5e-177 626.7 426 73.7
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 1.5e-177 626.7 433 72.7
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 1.9e-177 626.3 424 72.2
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 2.1e-176 622.9 381 77.2
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 2.8e-176 622.5 428 70.3
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 4.8e-176 621.7 428 70.3
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 9.0e-175 617.5 422 70.4
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 9.0e-175 617.5 425 72.2
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 1.2e-174 617.1 426 70.4
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 1.5e-174 616.7 431 68.9
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 4.5e-174 615.1 429 68.8
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 4.5e-174 615.1 516 60.7
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 5.8e-174 614.8 505 63.8
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 5.8e-174 614.8 429 72.5
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 2.2e-173 612.8 429 68.5
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 8.4e-173 610.9 508 62.8
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 1.1e-172 610.5 429 72.5
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 1.4e-172 610.1 381 76.1
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 1.9e-172 609.8 422 68.7
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 4.2e-172 608.6 430 69.3
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 7.1e-172 607.8 492 64.4
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 4.6e-171 605.1 492 62.8
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 1.8e-170 603.2 429 68.1
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 2.3e-170 602.8 439 67.4
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 2.3e-170 602.8 484 63.2
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 2.3e-170 602.8 424 69.6
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 2.3e-170 602.8 426 72.1
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 3.3e-169 599.0 429 66.4
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 4.3e-169 598.6 425 70.6
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 3.7e-168 595.5 429 68.8
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 4.8e-168 595.1 494 63.0
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 1.1e-167 594.0 432 67.8
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 1.1e-167 594.0 433 66.5
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 1.4e-167 593.6 428 68.0
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 4.0e-167 592.0 422 67.8
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 5.3e-167 591.7 508 61.4
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.9e-167 591.3 424 68.4
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.9e-167 591.3 424 68.4
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 2.0e-166 589.7 424 68.2
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 2.6e-166 589.3 459 63.6
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 2.6e-166 589.3 424 67.7
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 3.4e-166 589.0 424 67.2
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 3.4e-166 589.0 422 67.3
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 5.8e-166 588.2 496 61.1
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 5.8e-166 588.2 497 59.8
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.9e-165 585.9 423 67.8
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 3.8e-165 585.5 432 67.4
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.9e-165 585.1 490 61.6
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 4.9e-165 585.1 436 66.1
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 4.9e-165 585.1 447 64.4
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 1.1e-164 583.9 507 60.6
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.4e-164 583.6 490 61.4
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 1.1e-161 573.9 501 59.3
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 4.3e-161 572.0 489 62.4
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.6e-160 570.1 473 61.5
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 1.1e-159 567.4 440 64.3
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 1.8e-159 566.6 508 59.8
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 4.1e-159 565.5 534 56.7
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 1.2e-158 563.9 425 65.9
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 1.5e-158 563.5 513 59.6
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 6.5e-157 558.1 424 64.9
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 1.9e-156 556.6 431 64.3
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 3.2e-156 555.8 363 72.2
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 4.2e-156 555.4 427 64.6
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 7.2e-156 554.7 429 64.3
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 1.8e-154 550.1 493 58.8
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 2.3e-154 549.7 494 58.1
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 1.1e-153 547.4 426 63.4
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 1.5e-153 547.0 427 65.1
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 1.5e-153 547.0 434 64.5
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 1.3e-152 543.9 445 62.0
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 2.8e-152 542.7 495 58.0
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 2.8e-152 542.7 495 58.0
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 8.2e-152 541.2 492 57.7
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 1.1e-151 540.8 422 62.8
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 1.8e-151 540.0 422 64.2
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 3.1e-151 539.3 460 62.2
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 5.3e-151 538.5 426 63.1
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 1.0e-149 534.3 430 62.3
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 6.5e-149 531.6 434 65.0
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 1.4e-146 523.9 426 62.2
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 1.8e-146 523.5 396 65.2
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 3.3e-145 519.2 394 66.5
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 4.5e-142 508.8 422 59.7
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 7.7e-142 508.1 617 46.0
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 3.6e-139 499.2 381 64.3
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 1.4e-138 497.3 423 59.3
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 2.1e-123 446.8 255 81.2
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 1.3e-117 427.6 335 62.7
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 2.2e-96 357.1 237 73.8
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 5.2e-90 335.9 190 79.5
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 1.7e-80 304.3 179 77.1
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 4.6e-78 296.2 485 38.4
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.4e-74 284.6 226 61.1
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 3.4e-73 280.0 242 59.9
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 1.2e-70 271.6 236 60.2
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 4.6e-70 269.6 238 60.1
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 8.7e-69 265.4 159 74.2
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 1.1e-68 265.0 249 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 5.6e-60 236.1 562 30.2
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 2.4e-58 230.7 515 32.4
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 9.6e-52 208.8 445 31.5
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 4.6e-46 189.9 184 54.3
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 5.7e-36 156.4 350 30.9
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 4.2e-31 140.2 114 62.3
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 2.1e-30 137.9 148 49.3
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 3.6e-30 137.1 108 64.8
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.3e-24 118.6 84 65.5
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 1.8e-21 108.2 59 79.7
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 1.7e-19 101.7 130 44.6
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 1.7e-16 91.7 58 65.5
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 2.1e-14 84.7 161 30.4
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 1.8e-13 81.6 60 71.7
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 1.7e-11 75.1 73 54.8
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 2.8e-11 74.3 264 26.9
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 5.3e-10 70.1 42 71.4
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 4.5e-09 67.0 41 73.2
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 1.5e-07 62.0 161 28.0


User provided reference genes

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