Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0001610 Simmondsia chinensis HOM05D002637 ORTHO05D008095 2.3e-179 632.1 312 100.0
CSS0015236 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 3.8e-110 402.1 327 63.9
CSS0036120 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 8.5e-110 401.0 327 63.3
Hma1.2p1_0405F.1_g145580 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 1.6e-108 396.7 328 62.2
Hma1.2p1_3157F.1_g333383 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 1.6e-108 396.7 328 62.2
EL10Ac1g00753 Beta vulgaris HOM05D002637 ORTHO05D008095 1.1e-106 390.6 321 62.0
GSVIVG01018268001 Vitis vinifera HOM05D002637 ORTHO05D008095 4.4e-106 388.7 324 61.4
FAN03G3044 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.4e-104 383.6 323 59.1
AUR62021542 Chenopodium quinoa HOM05D002637 ORTHO05D008095 1.8e-104 383.3 320 59.7
FvH4_7g09990 Fragaria vesca HOM05D002637 ORTHO05D008095 3.1e-104 382.5 323 59.4
ECA240G0640 Erigeron canadensis HOM05D002637 ORTHO05D008095 2.0e-103 379.8 316 59.8
Prupe.2G132600 Prunus persica HOM05D002637 ORTHO05D008095 3.5e-103 379.0 324 60.5
RcHm_v2.0_Chr1g0347591 Rosa chinensis HOM05D002637 ORTHO05D008095 6.5e-102 374.8 323 60.1
AUR62008551 Chenopodium quinoa HOM05D002637 ORTHO05D008095 1.1e-101 374.0 323 59.4
FAN06G0182 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.5e-101 373.6 330 57.9
FAN06G4488 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.5e-101 373.6 330 57.9
Dinv43626 Davidia involucrata HOM05D002637 ORTHO05D008095 5.5e-101 371.7 331 59.8
QL04p030554 Quercus lobata HOM05D002637 ORTHO05D008095 5.5e-101 371.7 342 57.3
Haze_02837 Corylus avellana HOM05D002637 ORTHO05D008095 4.7e-100 368.6 330 57.3
Manes.01G272700 Manihot esculenta HOM05D002637 ORTHO05D008095 8.0e-100 367.9 323 58.2
Nn1g00861 Nelumbo nucifera HOM05D002637 ORTHO05D008095 1.0e-99 367.5 326 57.1
Glyma.13G187300 Glycine max HOM05D002637 ORTHO05D008095 3.0e-99 365.9 328 55.5
Thecc.01G393500 Theobroma cacao HOM05D002637 ORTHO05D008095 4.0e-99 365.5 329 59.6
Atru.chr5.146 Acer truncatum HOM05D002637 ORTHO05D008095 1.5e-98 363.6 330 57.9
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.6e-98 362.8 325 57.2
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 3.3e-98 362.5 320 58.1
Duzib133G1175 Durio zibethinus HOM05D002637 ORTHO05D008095 4.4e-98 362.1 329 59.0
Peaxi162Scf00030g00416 Petunia axillaris HOM05D002637 ORTHO05D008095 4.4e-98 362.1 331 57.7
Lalb_Chr03g0040331 Lupinus albus HOM05D002637 ORTHO05D008095 5.7e-98 361.7 332 55.7
Aqoxy3G02741 Aquilegia oxysepala HOM05D002637 ORTHO05D008095 1.7e-97 360.1 333 57.4
Ciclev10021077m.g Citrus clementina HOM05D002637 ORTHO05D008095 1.7e-97 360.1 335 57.3
Gohir.A08G058900 Gossypium hirsutum HOM05D002637 ORTHO05D008095 2.8e-97 359.4 322 57.5
CANSAT64G0516 Cannabis sativa HOM05D002637 ORTHO05D008095 3.7e-97 359.0 319 58.3
arahy.Tifrunner.gnm1.ann1.XZZ81X Arachis hypogaea HOM05D002637 ORTHO05D008095 6.3e-97 358.2 320 57.2
FAN10G1960 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.4e-96 357.1 331 56.5
HanXRQChr13g0423181 Helianthus annuus HOM05D002637 ORTHO05D008095 1.8e-96 356.7 320 57.5
Gorai.004G071300 Gossypium raimondii HOM05D002637 ORTHO05D008095 3.1e-96 355.9 320 57.5
TWI59G1212 Tripterygium wilfordii HOM05D002637 ORTHO05D008095 3.1e-96 355.9 330 57.9
Medtr7g407140 Medicago truncatula HOM05D002637 ORTHO05D008095 4.1e-96 355.5 308 56.5
Psat0s4320g0040 Pisum sativum HOM05D002637 ORTHO05D008095 5.3e-96 355.1 312 55.8
Phvul.011G190700 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 9.1e-96 354.4 319 55.5
Lsat_1_v5_gn_3_131600 Lactuca sativa HOM05D002637 ORTHO05D008095 1.2e-95 354.0 318 56.6
Gohir.D08G068100 Gossypium hirsutum HOM05D002637 ORTHO05D008095 2.0e-95 353.2 322 57.1
Sed0022781 Sechium edule HOM05D002637 ORTHO05D008095 2.0e-95 353.2 324 55.9
Eucgr.D01520 Eucalyptus grandis HOM05D002637 ORTHO05D008095 1.0e-94 350.9 332 54.8
Sopen01g036170 Solanum pennellii HOM05D002637 ORTHO05D008095 1.7e-94 350.1 331 56.2
Nitab4.5_0003696g0060 Nicotiana tabacum HOM05D002637 ORTHO05D008095 2.2e-94 349.7 331 56.2
Solyc01g090380.3 Solanum lycopersicum HOM05D002637 ORTHO05D008095 2.2e-94 349.7 331 56.2
Cpa.g.sc166.42 Carica papaya HOM05D002637 ORTHO05D008095 6.5e-94 348.2 332 55.4
MELO3C005982.2 Cucumis melo HOM05D002637 ORTHO05D008095 1.9e-93 346.7 328 56.1
CsaV3_3G007610 Cucumis sativus L. HOM05D002637 ORTHO05D008095 3.2e-93 345.9 328 55.8
Lj7A545T102 Lonicera japonica HOM05D002637 ORTHO05D008095 3.2e-93 345.9 331 54.4
VMungo1127G0026 Vigna mungo HOM05D002637 ORTHO05D008095 3.2e-93 345.9 315 54.9
Nitab4.5_0003553g0010 Nicotiana tabacum HOM05D002637 ORTHO05D008095 5.5e-93 345.1 331 55.6
Potri.002G137300 Populus trichocarpa HOM05D002637 ORTHO05D008095 5.5e-93 345.1 320 56.9
CDE09G0379 Ceratophyllum demersum HOM05D002637 ORTHO05D008095 7.2e-93 344.7 325 53.8
Lj1g0002851 Lotus japonicus HOM05D002637 ORTHO05D008095 9.4e-93 344.4 328 54.0
ClCG05G000440 Citrullus lanatus HOM05D002637 ORTHO05D008095 2.7e-92 342.8 328 54.9
Oeu063231.1 Olea europaea HOM05D002637 ORTHO05D008095 3.6e-92 342.4 332 56.9
MD07G1104800 Malus domestica HOM05D002637 ORTHO05D008095 1.0e-91 340.9 296 58.8
PGSC0003DMG402026045 Solanum tuberosum HOM05D002637 ORTHO05D008095 1.4e-91 340.5 331 54.7
Cc02_g25040 Coffea canephora HOM05D002637 ORTHO05D008095 1.8e-91 340.1 328 55.5
Actinidia12150 Actinidia chinensis HOM05D002637 ORTHO05D008095 3.0e-91 339.3 302 58.9
CAN.G362.5 Capsicum annuum HOM05D002637 ORTHO05D008095 1.5e-90 337.0 329 53.5
PGR004G1933 Punica granatum HOM05D002637 ORTHO05D008095 5.7e-90 335.1 330 52.1
Rhsim07G0035200 Rhododendron simsii HOM05D002637 ORTHO05D008095 5.7e-90 335.1 323 56.3
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 7.5e-90 334.7 313 56.2
PSO063G7293 Papaver somniferum HOM05D002637 ORTHO05D008095 2.8e-89 332.8 331 52.6
THA.LOC104827587 Tarenaya hassleriana HOM05D002637 ORTHO05D008095 2.8e-89 332.8 330 53.9
Carub.0004s2744 Capsella rubella HOM05D002637 ORTHO05D008095 4.8e-89 332.0 328 53.0
MSTRG.20697 Avicennia marina HOM05D002637 ORTHO05D008095 8.3e-89 331.3 331 55.3
Migut.B01542 Erythranthe guttata HOM05D002637 ORTHO05D008095 3.5e-87 325.9 324 54.9
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 4.5e-87 325.5 272 58.8
Aa31LG1G26400 Aethionema arabicum HOM05D002637 ORTHO05D008095 1.3e-86 323.9 345 49.9
CARHR140110 Cardamine hirsuta HOM05D002637 ORTHO05D008095 1.7e-86 323.6 318 52.8
COL.COLO4_12421 Corchorus olitorius HOM05D002637 ORTHO05D008095 2.2e-86 323.2 326 55.8
BcaC02g07119 Brassica carinata HOM05D002637 ORTHO05D008095 1.5e-85 320.5 313 53.0
Thhalv10001543m.g Eutrema salsugineum HOM05D002637 ORTHO05D008095 1.5e-85 320.5 329 50.8
BcaB06g29403 Brassica carinata HOM05D002637 ORTHO05D008095 4.2e-85 318.9 315 54.3
A04p33520 Brassica napus HOM05D002637 ORTHO05D008095 5.5e-85 318.5 315 51.4
vmacro13491 Vaccinium macrocarpon HOM05D002637 ORTHO05D008095 5.5e-85 318.5 282 58.5
C04p71280 Brassica napus HOM05D002637 ORTHO05D008095 2.8e-84 316.2 318 52.5
BolC4t28632H Brassica oleracea HOM05D002637 ORTHO05D008095 2.8e-84 316.2 318 52.5
AL4G43950 Arabidopsis lyrata HOM05D002637 ORTHO05D008095 1.4e-83 313.9 332 51.5
Sp4g26950 Schrenkiella parvula HOM05D002637 ORTHO05D008095 2.3e-83 313.2 336 49.4
BraA04t18814Z Brassica rapa HOM05D002637 ORTHO05D008095 6.8e-83 311.6 314 52.2
Sabra02G0106200 Salix brachista HOM05D001766 ORTHO05D001875 5.7e-82 308.5 370 47.8
HPP92_014683 Vanilla planifolia HOM05D002637 ORTHO05D008095 1.4e-80 303.9 318 50.9
Hund17095 Selenicereus undatus HOM05D002637 ORTHO05D008095 3.5e-79 299.3 262 58.0
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.7e-78 297.0 267 58.1
AT2G44850 Arabidopsis thaliana HOM05D002637 ORTHO05D008095 2.9e-78 296.2 285 51.9
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 8.6e-78 294.7 328 50.3
SHI13611 Sapria himalayana HOM05D002637 ORTHO05D008095 1.6e-76 290.4 331 49.2
Zm00001eb186370 Zea mays HOM05D002637 ORTHO05D008095 5.7e-74 282.0 337 45.1
Prupe.2G128900 Prunus persica HOM05D002637 ORTHO05D008095 1.7e-73 280.4 327 50.5
Os02g0655100 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D008095 2.4e-72 276.6 323 45.5
DCAR_015837 Daucus carota HOM05D002637 ORTHO05D008095 1.5e-69 267.3 318 46.2
PSO782G4032 Papaver somniferum HOM05D002637 ORTHO05D008095 2.1e-68 263.5 320 46.9
ATR0057G061 Amborella trichopoda HOM05D002637 ORTHO05D008095 1.8e-67 260.4 342 44.4
AagrBONN_evm.TU.Sc2ySwM_117.1982 Anthoceros agrestis HOM05D002637 ORTHO05D008095 3.1e-67 259.6 331 43.2
Eucgr.D01526 Eucalyptus grandis HOM05D002637 ORTHO05D008095 9.8e-66 254.6 255 53.3
TAR629G1915 Trochodendron aralioides HOM05D002637 ORTHO05D008095 5.2e-59 232.3 205 59.0
Pp3c12_10320 Physcomitrium patens HOM05D002637 ORTHO05D008095 5.4e-56 222.2 385 37.4
Pp3c4_13850 Physcomitrium patens HOM05D002637 ORTHO05D008095 1.3e-54 217.6 383 36.0
SalBow5G4529 Salvia bowleyana HOM05D002637 ORTHO05D008095 3.9e-54 216.1 189 62.4
Ah.05g177920 Amaranthus hybridus HOM05D002637 ORTHO05D008095 4.0e-51 206.1 133 72.9
TPR.G28606 Trifolium pratense HOM05D002637 ORTHO05D008095 1.7e-41 174.1 134 61.9
MBI04_g07220_MAGBIO Magnolia biondii HOM05D002637 ORTHO05D008095 2.1e-39 167.2 107 70.1
Hma1.2p1_2406F.1_g321490 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 3.9e-38 162.9 150 57.3
CBR_g61261 Chara braunii HOM05D002637 ORTHO05D008095 5.6e-37 159.1 314 33.1
SEGI_39924 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 2.4e-35 153.7 134 53.0
SEGI_14087 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 8.4e-33 145.2 216 40.3
TPR.G36686 Trifolium pratense HOM05D002637 ORTHO05D008095 2.5e-29 133.7 101 65.3
TPR.G7688 Trifolium pratense HOM05D002637 ORTHO05D008095 2.4e-27 127.1 110 59.1
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 2.6e-26 123.6 116 50.9
TPR.G32964 Trifolium pratense HOM05D002637 ORTHO05D008095 7.9e-23 112.1 87 60.9
Atru.chr5.3330 Acer truncatum HOM05D002637 ORTHO05D008095 1.1e-21 108.2 158 46.2
Medtr7g006510 Medicago truncatula HOM05D002637 ORTHO05D008095 5.6e-21 105.9 108 46.3
Cre03.g181600 Chlamydomonas reinhardtii HOM05D002637 ORTHO05D008095 3.8e-17 93.2 312 25.0
FAN06G2370 Fragaria x ananassa HOM05D002637 ORTHO05D008095 4.2e-16 89.7 59 71.2
Phvul.011G167200 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 9.3e-16 88.6 109 43.1
Aa31LG7G11720 Aethionema arabicum HOM05D002637 ORTHO05D008095 3.7e-12 76.6 67 50.7
Atru.chr5.3333 Acer truncatum HOM05D000263 ORTHO05D000213 7.6e-10 68.9 96 45.8
Atru.chr5.3338 Acer truncatum HOM05D002637 ORTHO05D008095 6.1e-07 59.3 48 60.4
TAR629G2985 Trochodendron aralioides HOM05D002637 ORTHO05D008095 5.1e-06 56.2 49 53.1


User provided reference genes

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