Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 0.0e+00 1107.0 602 100.0
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 6.4e-114 415.6 583 48.0
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.5e-110 404.4 623 44.8
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 5.3e-108 396.0 588 43.9
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.8e-103 380.9 578 43.9
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 6.9e-100 369.0 571 42.6
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.0e-99 367.5 607 42.5
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 6.5e-98 362.5 591 40.3
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.8e-95 354.4 617 40.5
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 8.7e-95 352.1 692 38.6
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.3e-94 350.1 660 37.9
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 4.8e-93 346.3 581 41.0
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.4e-92 344.7 661 38.7
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.1e-92 343.6 579 40.1
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.0e-91 340.9 666 38.3
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 4.5e-91 339.7 592 42.7
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-89 335.1 564 41.1
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.4e-89 334.7 612 39.4
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.2e-89 333.2 555 43.8
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 7.2e-89 332.4 576 42.9
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 9.3e-89 332.0 568 40.3
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.6e-88 329.7 545 42.0
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.0e-87 328.6 557 39.1
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.0e-87 328.6 570 40.2
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.5e-86 324.7 585 40.3
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 3.3e-86 323.6 559 39.0
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.7e-86 322.0 559 39.0
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.6e-85 321.2 585 39.8
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.8e-85 320.5 657 37.1
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.4e-84 318.2 584 40.1
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 4.1e-84 316.6 547 39.5
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.6e-83 313.9 572 37.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.4e-83 313.5 579 39.0
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.9e-83 312.8 633 37.4
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 7.7e-83 312.4 590 38.3
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.7e-82 311.2 641 36.7
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.9e-82 310.5 563 38.4
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.9e-82 310.5 616 38.3
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 5.0e-82 309.7 576 38.4
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.1e-81 308.5 594 37.7
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.5e-81 307.4 551 39.0
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.0e-79 302.0 580 38.3
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.0e-79 302.0 518 40.9
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.8e-79 301.2 587 39.9
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.0e-79 300.4 662 36.6
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 3.0e-79 300.4 537 40.4
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.7e-79 299.3 649 35.1
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.5e-78 298.1 599 37.6
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 9.7e-78 295.4 596 37.6
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.7e-77 293.5 613 36.1
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.1e-76 292.0 655 35.3
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.8e-76 291.2 623 36.0
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.1e-76 290.4 532 38.3
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.5e-75 288.1 606 35.5
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 2.2e-74 284.3 624 34.9
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.9e-74 283.9 623 35.3
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 6.5e-74 282.7 589 37.0
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 7.2e-73 279.3 647 35.2
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.1e-72 277.7 526 38.6
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 3.9e-71 273.5 603 35.2
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.1e-70 271.9 543 39.0
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.3e-69 268.5 531 36.0
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-69 267.3 591 36.0
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.4e-68 265.0 582 35.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-68 264.6 560 36.1
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.8e-68 264.6 570 36.5
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.2e-67 261.9 587 36.8
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 5.9e-67 259.6 593 35.4
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.3e-66 258.5 689 32.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.7e-66 258.1 521 37.4
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 8.5e-66 255.8 578 35.5
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 8.5e-66 255.8 578 35.5
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 8.5e-66 255.8 583 36.0
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.6e-64 251.5 570 35.4
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.6e-64 251.5 570 35.4
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 5.2e-63 246.5 623 33.2
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 5.2e-63 246.5 555 37.5
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.2e-62 245.4 647 32.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.5e-62 242.7 556 36.0
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 7.5e-62 242.7 586 34.1
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.3e-61 241.9 580 34.3
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 4.8e-61 240.0 568 34.5
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.4e-60 238.4 578 34.3
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 3.1e-60 237.3 578 32.5
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.2e-59 235.3 573 33.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.2e-59 235.3 572 36.4
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.0e-59 234.6 589 34.0
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-58 231.9 555 34.6
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 2.2e-58 231.1 580 33.8
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 9.4e-57 225.7 599 35.6
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 9.4e-57 225.7 727 30.5
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 9.4e-57 225.7 573 32.8
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.6e-56 224.9 563 33.6
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 8.0e-56 222.6 555 34.1
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 8.8e-55 219.2 571 32.9
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.5e-54 218.4 644 32.1
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.4e-54 217.2 588 32.0
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 2.2e-53 214.5 604 31.0
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 4.8e-53 213.4 644 30.0
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.8e-52 211.5 593 32.0
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.4e-52 211.1 748 29.7
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 3.1e-52 210.7 753 31.9
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 4.1e-52 210.3 613 31.0
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 7.0e-52 209.5 743 27.6
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 4.5e-51 206.8 619 31.8
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.7e-50 204.9 539 33.2
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 3.8e-50 203.8 559 31.5
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 8.6e-50 202.6 586 31.1
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.1e-49 202.2 531 34.3
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 4.2e-49 200.3 525 32.4
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 9.5e-49 199.1 215 50.7
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 3.0e-47 194.1 510 33.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 5.2e-47 193.4 533 31.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 9.8e-46 189.1 478 32.2
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 9.2e-44 182.6 741 30.2
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.5e-43 180.3 795 29.1
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.3e-42 177.9 505 34.7
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.9e-42 177.6 176 55.7
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 6.6e-42 176.4 470 33.4
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.4e-39 168.7 634 29.8
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 3.4e-38 164.1 566 29.5
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.7e-37 161.8 424 31.1
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.0e-35 154.8 288 40.3
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.7e-34 151.8 290 37.2
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 8.6e-34 149.4 277 39.0
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.5e-33 148.7 271 42.1
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 4.3e-33 147.1 276 38.4
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.2e-32 145.6 176 49.4
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.2e-32 145.6 275 37.8
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.8e-32 144.4 161 50.9
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 3.6e-32 144.1 280 37.5
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.5e-30 138.7 204 44.1
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 2.9e-29 134.4 224 39.7
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.4e-28 132.1 689 24.4
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 3.2e-28 131.0 319 35.1
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.1e-28 130.6 323 32.8
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 5.4e-28 130.2 701 23.7
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.6e-27 128.6 402 32.6
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 2.7e-27 127.9 141 48.2
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.4e-23 115.5 282 33.3
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.9e-20 105.1 136 44.1
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.1e-20 104.0 112 54.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.1e-19 101.7 537 26.6
Sc02g0003070 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.5e-19 100.9 345 32.2
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 5.1e-18 97.1 86 53.5
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.1e-18 97.1 487 25.7
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 3.1e-15 87.8 348 28.2
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 3.4e-14 84.3 206 30.6
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 9.9e-14 82.8 67 61.2
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 2.9e-13 81.3 401 29.2
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 8.4e-13 79.7 324 32.4
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.1e-12 79.3 324 32.4
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 3.2e-12 77.8 62 53.2
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 4.1e-12 77.4 118 37.3
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 5.4e-12 77.0 319 27.9
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 3.5e-11 74.3 257 30.0
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.0e-10 72.8 86 40.7
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.3e-10 72.4 653 23.7
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-10 72.0 186 31.2
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.0e-10 71.2 116 40.5
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 6.6e-10 70.1 108 35.2
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 8.7e-10 69.7 164 35.4
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.7e-10 69.7 186 30.6
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.9e-09 68.6 110 39.1
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 5.6e-09 67.0 76 47.4
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 3.6e-08 64.3 85 42.4


User provided reference genes

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