Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0001290 Simmondsia chinensis HOM05D006696 ORTHO05D008683 0.0e+00 1313.5 634 100.0
AUR62004189 Chenopodium quinoa HOM05D006696 ORTHO05D008683 2.0e-246 855.9 549 74.3
Rhsim01G0149400 Rhododendron simsii HOM05D006696 ORTHO05D008683 1.1e-244 850.1 627 66.8
Thecc.08G173400 Theobroma cacao HOM05D006696 ORTHO05D008683 7.0e-244 847.4 554 71.8
vmacro21023 Vaccinium macrocarpon HOM05D006696 ORTHO05D008683 2.0e-243 845.9 626 66.0
Hund27369 Selenicereus undatus HOM05D006696 ORTHO05D008683 5.9e-243 844.3 626 66.8
EL10Ac1g00866 Beta vulgaris HOM05D006696 ORTHO05D008683 1.9e-241 839.3 559 72.6
CSS0026641 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 2.5e-241 839.0 551 72.1
Gohir.D13G120600 Gossypium hirsutum HOM05D006696 ORTHO05D008683 1.6e-240 836.3 550 71.6
Gorai.013G134800 Gossypium raimondii HOM05D006696 ORTHO05D008683 3.6e-240 835.1 550 71.5
TWI14G1225 Tripterygium wilfordii HOM05D006696 ORTHO05D008683 2.3e-239 832.4 551 71.7
Hma1.2p1_0301F.1_g118560 Hydrangea macrophylla HOM05D006696 ORTHO05D008683 1.2e-238 830.1 554 70.6
COL.COLO4_24599 Corchorus olitorius HOM05D006696 ORTHO05D008683 2.0e-238 829.3 569 69.6
CSS0014714 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 2.6e-238 828.9 626 66.5
Ah.05g174590 Amaranthus hybridus HOM05D006696 ORTHO05D008683 3.3e-238 828.6 570 69.3
Ciclev10019231m.g Citrus clementina HOM05D006696 ORTHO05D008683 7.5e-238 827.4 619 64.8
PGSC0003DMG400025962 Solanum tuberosum HOM05D006696 ORTHO05D008683 1.4e-236 823.2 550 72.0
Gohir.A13G117300 Gossypium hirsutum HOM05D006696 ORTHO05D008683 2.4e-236 822.4 592 66.6
Atru.chr5.281 Acer truncatum HOM05D006696 ORTHO05D008683 2.0e-235 819.3 621 63.9
Cpa.g.sc611.2 Carica papaya HOM05D006696 ORTHO05D008683 2.0e-235 819.3 556 69.2
Manes.01G267400 Manihot esculenta HOM05D006696 ORTHO05D008683 2.0e-235 819.3 625 65.0
Sopen01g036880 Solanum pennellii HOM05D006696 ORTHO05D008683 2.0e-235 819.3 550 71.6
Lj7C531T6 Lonicera japonica HOM05D006696 ORTHO05D008683 3.5e-235 818.5 562 68.5
Cc02_g24120 Coffea canephora HOM05D006696 ORTHO05D008683 5.9e-235 817.8 547 70.9
Prupe.2G142200 Prunus persica HOM05D006696 ORTHO05D008683 5.9e-235 817.8 550 70.7
Solyc01g091130.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 1.3e-234 816.6 550 71.5
CAN.G388.34 Capsicum annuum HOM05D006696 ORTHO05D008683 1.9e-233 812.8 550 70.9
Psat7g231000 Pisum sativum HOM05D006696 ORTHO05D008683 5.5e-233 811.2 553 69.3
THA.LOC104814083 Tarenaya hassleriana HOM05D006696 ORTHO05D008683 5.5e-233 811.2 606 65.3
TAR629G0060 Trochodendron aralioides HOM05D006696 ORTHO05D008683 2.1e-232 809.3 595 66.4
MD07G1119000 Malus domestica HOM05D006696 ORTHO05D008683 2.7e-232 808.9 616 65.3
Potri.002G146100 Populus trichocarpa HOM05D006696 ORTHO05D008683 3.6e-232 808.5 555 69.5
Nn6g34076 Nelumbo nucifera HOM05D006696 ORTHO05D008683 8.0e-232 807.4 556 68.5
QL08p052869 Quercus lobata HOM05D006696 ORTHO05D008683 8.0e-232 807.4 563 68.9
Lsat_1_v5_gn_3_132380 Lactuca sativa HOM05D006696 ORTHO05D008683 3.0e-231 805.4 571 67.6
Aqoxy7G00691 Aquilegia oxysepala HOM05D006696 ORTHO05D008683 1.2e-230 803.5 554 68.4
Ca_19926_v3 Cicer arietinum L. HOM05D006696 ORTHO05D008683 1.2e-230 803.5 559 68.2
Lj3g0014279 Lotus japonicus HOM05D006696 ORTHO05D008683 1.5e-230 803.1 560 67.9
Medtr4g025130 Medicago truncatula HOM05D006696 ORTHO05D008683 1.5e-230 803.1 621 62.8
Nitab4.5_0010616g0010 Nicotiana tabacum HOM05D006696 ORTHO05D008683 1.5e-230 803.1 662 62.2
RcHm_v2.0_Chr1g0349711 Rosa chinensis HOM05D006696 ORTHO05D008683 2.0e-230 802.7 550 68.7
Lalb_Chr07g0189961 Lupinus albus HOM05D006696 ORTHO05D008683 3.4e-230 802.0 553 68.5
Glyma.03G028100 Glycine max HOM05D006696 ORTHO05D008683 7.5e-230 800.8 550 68.2
Sabra02G0113800 Salix brachista HOM05D006696 ORTHO05D008683 7.5e-230 800.8 555 69.2
VMungo0331G0021 Vigna mungo HOM05D006696 ORTHO05D008683 7.5e-230 800.8 549 67.2
Eucgr.D02468 Eucalyptus grandis HOM05D006696 ORTHO05D008683 9.8e-230 800.4 553 67.5
Haze_16792 Corylus avellana HOM05D006696 ORTHO05D008683 4.8e-229 798.1 554 67.9
CiPaw.01G264000 Carya illinoinensis HOM05D006696 ORTHO05D008683 8.3e-229 797.3 606 64.2
Peaxi162Scf00013g03019 Petunia axillaris HOM05D006696 ORTHO05D008683 1.8e-228 796.2 551 70.1
HanXRQChr03g0093971 Helianthus annuus HOM05D006696 ORTHO05D008683 4.1e-228 795.0 551 68.4
Sed0011228 Sechium edule HOM05D006696 ORTHO05D008683 9.1e-228 793.9 570 66.3
ClCG05G002380 Citrullus lanatus HOM05D006696 ORTHO05D008683 1.0e-226 790.4 571 67.1
TPR.G7586 Trifolium pratense HOM05D006696 ORTHO05D008683 1.0e-226 790.4 561 67.0
SGA_v2.0_scaffold95G28911 Striga asiatica HOM05D006696 ORTHO05D008683 1.7e-226 789.6 624 62.2
CsaV3_3G009820 Cucumis sativus L. HOM05D006696 ORTHO05D008683 1.9e-225 786.2 555 66.7
Aa31LG1G11340 Aethionema arabicum HOM05D006696 ORTHO05D008683 2.5e-225 785.8 547 67.6
Phvul.010G081400 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 3.3e-225 785.4 623 61.6
Nitab4.5_0000457g0140 Nicotiana tabacum HOM05D006696 ORTHO05D008683 1.6e-224 783.1 653 61.6
arahy.Tifrunner.gnm1.ann1.30BUB6 Arachis hypogaea HOM05D006696 ORTHO05D008683 6.1e-224 781.2 556 66.0
MSTRG.20736 Avicennia marina HOM05D006696 ORTHO05D008683 8.0e-224 780.8 629 60.9
arahy.Tifrunner.gnm1.ann1.PBYD8I Arachis hypogaea HOM05D006696 ORTHO05D008683 1.8e-223 779.6 556 65.8
FAN01G1519 Fragaria x ananassa HOM05D006696 ORTHO05D008683 2.0e-222 776.2 565 65.3
FvH4_7g11430 Fragaria vesca HOM05D006696 ORTHO05D008683 5.7e-222 774.6 565 65.3
MELO3C006203.2 Cucumis melo HOM05D006696 ORTHO05D008683 1.7e-221 773.1 602 62.8
FAN06G3694 Fragaria x ananassa HOM05D006696 ORTHO05D008683 2.8e-221 772.3 565 65.1
FAN06G1977 Fragaria x ananassa HOM05D006696 ORTHO05D008683 1.1e-220 770.4 565 65.1
Migut.B01614 Erythranthe guttata HOM05D006696 ORTHO05D008683 5.4e-220 768.1 625 61.4
ECA232G1408 Erigeron canadensis HOM05D006696 ORTHO05D008683 7.0e-220 767.7 564 65.1
SalBow5G3816 Salvia bowleyana HOM05D006696 ORTHO05D008683 1.3e-218 763.5 612 60.3
Sp1g37340 Schrenkiella parvula HOM05D006696 ORTHO05D008683 5.0e-218 761.5 564 66.1
FAN03G1153 Fragaria x ananassa HOM05D006696 ORTHO05D008683 2.5e-217 759.2 626 60.2
MBI12_g20403_MAGBIO Magnolia biondii HOM05D006696 ORTHO05D008683 6.8e-215 751.1 556 64.7
Duzib177G0277 Durio zibethinus HOM05D006696 ORTHO05D008683 2.0e-214 749.6 550 66.5
AL1G10260 Arabidopsis lyrata HOM05D006696 ORTHO05D008683 1.7e-213 746.5 576 64.2
AT1G02020 Arabidopsis thaliana HOM05D006696 ORTHO05D008683 8.3e-213 744.2 555 64.5
unitig_22.g5383 Utricularia gibba HOM05D006696 ORTHO05D008683 1.1e-212 743.8 555 63.4
PSO478G1798 Papaver somniferum HOM05D006696 ORTHO05D008683 3.2e-212 742.3 578 63.7
PSO782G1103 Papaver somniferum HOM05D006696 ORTHO05D008683 9.2e-212 740.7 551 66.1
C06p05680 Brassica napus HOM05D006696 ORTHO05D008683 1.6e-211 740.0 610 62.0
BraA06t23521Z Brassica rapa HOM05D006696 ORTHO05D008683 7.8e-211 737.6 571 63.7
BcaC08g43220 Brassica carinata HOM05D006696 ORTHO05D008683 1.7e-210 736.5 611 61.7
BolC6t35679H Brassica oleracea HOM05D006696 ORTHO05D008683 1.7e-210 736.5 611 61.7
BcaB07g33486 Brassica carinata HOM05D006696 ORTHO05D008683 3.9e-210 735.3 600 62.2
Carub.0001s0021 Capsella rubella HOM05D006696 ORTHO05D008683 3.9e-210 735.3 574 62.7
A06p03080 Brassica napus HOM05D006696 ORTHO05D008683 6.6e-210 734.6 606 61.6
Thhalv10007140m.g Eutrema salsugineum HOM05D006696 ORTHO05D008683 2.5e-209 732.6 563 63.9
CDE04G1815 Ceratophyllum demersum HOM05D006696 ORTHO05D008683 7.5e-206 721.1 570 60.7
GSVIVG01027661001 Vitis vinifera HOM05D006696 ORTHO05D008683 1.9e-204 716.5 565 62.3
AUR62013656 Chenopodium quinoa HOM05D006696 ORTHO05D008683 6.8e-199 698.0 547 63.8
ATR0041G020 Amborella trichopoda HOM05D006696 ORTHO05D008683 1.8e-191 673.3 547 59.2
HPP92_022287 Vanilla planifolia HOM05D006696 ORTHO05D008683 1.3e-189 667.2 618 54.7
SEGI_31859 Sequoiadendron giganteum HOM05D006696 ORTHO05D008683 4.6e-187 658.7 574 56.8
Actinidia33475 Actinidia chinensis HOM05D006696 ORTHO05D008683 1.0e-186 657.5 560 58.9
CARHR000330 Cardamine hirsuta HOM05D006696 ORTHO05D008683 1.8e-170 603.6 494 59.5
Os10g0190800 Oryza sativa ssp. japonica HOM05D006696 ORTHO05D008683 4.3e-169 599.0 552 55.6
SMO011G0006 Selaginella moellendorffii HOM05D006696 ORTHO05D008683 1.4e-167 594.0 561 53.8
Zm00001eb145800 Zea mays HOM05D006696 ORTHO05D008683 8.7e-162 574.7 552 53.1
AagrBONN_evm.TU.Sc2ySwM_228.1723 Anthoceros agrestis HOM05D006696 ORTHO05D008683 6.9e-159 565.1 623 49.1
Mapoly0117s0009 Marchantia polymorpha HOM05D006696 ORTHO05D008683 5.8e-158 562.0 559 53.0
Pp3c18_8320 Physcomitrium patens HOM05D006696 ORTHO05D008683 5.1e-154 548.9 550 50.4
DCAR_015916 Daucus carota HOM05D006696 ORTHO05D008683 2.0e-142 510.4 332 69.9
Solyc01g091140.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 1.0e-114 418.3 458 50.4
Dinv32364 Davidia involucrata HOM05D006696 ORTHO05D008683 4.4e-97 359.8 212 77.4
CANSAT21G0759 Cannabis sativa HOM05D006696 ORTHO05D008683 1.7e-72 278.1 167 73.1
Oeu037929.1 Olea europaea HOM05D006696 ORTHO05D008683 3.6e-67 260.4 218 59.6
SGA_v2.0_scaffold581G53050 Striga asiatica HOM05D006696 ORTHO05D008683 3.2e-63 247.3 192 58.3
Sopen01g036900 Solanum pennellii HOM05D006696 ORTHO05D008683 2.7e-54 217.6 202 56.9
Atru.chr4.660 Acer truncatum HOM05D006696 ORTHO05D030753 2.1e-38 164.9 133 54.9
CARHR000320 Cardamine hirsuta HOM05D006696 ORTHO05D008683 6.7e-29 133.3 64 87.5
VMungo0720G2385 Vigna mungo HOM05D006696 ORTHO05D008683 5.7e-28 130.2 83 69.9
Zm00001eb027220 Zea mays HOM05D006696 ORTHO05D008683 6.9e-26 123.2 102 55.9
VMungo1309G0520 Vigna mungo HOM05D006696 ORTHO05D008683 1.0e-24 119.4 69 73.9
Phvul.010G066778 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 1.0e-16 92.8 89 55.1
Cpa.g.sc14.75 Carica papaya HOM05D006696 ORTHO05D008683 1.4e-13 82.4 37 94.6
Atru.chr4.903 Acer truncatum HOM05D006696 ORTHO05D030753 5.9e-09 67.0 42 66.7
Lsat_1_v5_gn_8_142581 Lactuca sativa HOM05D006696 ORTHO05D030753 3.8e-08 64.3 90 42.2


User provided reference genes

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