Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.1e-256 889.4 441 100.0
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 4.6e-170 601.7 450 66.9
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 3.0e-169 599.0 442 67.0
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 5.7e-168 594.7 427 68.4
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 9.7e-168 594.0 442 66.3
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 6.3e-167 591.3 449 65.9
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.1e-166 590.5 448 65.8
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.8e-166 589.7 449 65.9
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.8e-166 589.7 444 66.9
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.4e-166 589.3 442 65.6
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 2.4e-166 589.3 445 66.7
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 5.3e-166 588.2 446 65.9
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 9.0e-166 587.4 448 67.2
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 2.0e-165 586.3 446 65.5
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.0e-164 581.6 442 64.9
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 6.5e-164 581.3 447 66.2
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.4e-163 580.1 447 66.2
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 2.5e-163 579.3 447 64.9
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 3.2e-163 578.9 450 64.7
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 7.2e-163 577.8 442 63.1
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.2e-162 577.0 449 64.1
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.6e-162 576.6 445 64.5
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 7.9e-162 574.3 450 64.7
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 3.0e-161 572.4 444 63.3
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 6.7e-161 571.2 449 63.7
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 6.7e-161 571.2 443 65.7
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.1e-160 570.5 434 64.7
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 2.0e-160 569.7 455 62.0
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 2.8e-159 565.8 442 61.8
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 3.7e-159 565.5 448 63.8
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 4.8e-159 565.1 374 73.5
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 6.9e-158 561.2 446 63.9
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 9.1e-158 560.8 441 64.2
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.2e-157 560.5 441 63.9
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.0e-157 559.7 439 64.0
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.0e-157 559.7 439 64.0
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.4e-157 558.9 444 62.6
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 4.5e-157 558.5 429 66.2
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 4.5e-157 558.5 435 63.2
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 1.0e-156 557.4 444 62.8
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.3e-156 557.0 422 64.2
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.7e-156 556.6 444 63.5
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.9e-156 555.8 444 62.6
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 8.5e-156 554.3 446 62.1
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.1e-155 553.9 432 64.1
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.4e-155 553.5 439 63.1
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.4e-155 553.5 444 62.2
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 5.5e-155 551.6 435 63.4
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 7.2e-155 551.2 414 66.2
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 7.2e-155 551.2 446 62.6
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.4e-155 550.8 441 62.4
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.2e-154 550.4 447 62.0
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 4.7e-154 548.5 452 61.5
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.1e-154 548.1 448 61.2
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 7.9e-154 547.7 439 61.7
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 1.0e-153 547.4 443 61.6
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 2.3e-153 546.2 446 61.2
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 5.1e-153 545.0 426 65.0
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 5.1e-153 545.0 426 65.0
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 6.7e-153 544.7 427 64.2
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 8.8e-153 544.3 442 61.3
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.5e-152 543.5 430 62.3
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 2.0e-152 543.1 429 61.1
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.3e-152 542.3 448 60.5
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 5.7e-152 541.6 443 61.2
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 5.7e-152 541.6 441 61.2
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 3.7e-151 538.9 390 66.7
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 6.3e-151 538.1 454 61.9
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.4e-150 537.0 431 61.9
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 2.4e-150 536.2 430 61.4
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 2.4e-150 536.2 413 64.6
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 4.1e-150 535.4 432 61.3
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 5.3e-150 535.0 373 67.0
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 3.5e-149 532.3 365 67.9
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.0e-148 530.8 451 59.4
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 1.0e-148 530.8 443 59.8
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.7e-148 530.0 402 66.2
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 2.9e-148 529.3 401 66.1
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 6.5e-148 528.1 421 61.5
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 3.2e-147 525.8 438 58.9
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 2.7e-146 522.7 416 61.8
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 5.2e-145 518.5 434 61.1
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 5.2e-145 518.5 421 61.5
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.6e-144 516.2 373 65.7
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 3.3e-144 515.8 421 61.0
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 5.7e-144 515.0 443 60.0
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 7.4e-144 514.6 416 61.5
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.3e-143 513.8 459 57.1
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 6.3e-143 511.5 434 58.3
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 4.5e-141 505.4 432 59.7
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.7e-140 503.4 338 69.2
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.8e-140 502.3 433 61.2
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 6.5e-140 501.5 369 65.0
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 6.5e-140 501.5 438 58.2
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.1e-139 500.7 429 59.4
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.5e-139 500.4 431 60.6
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.5e-139 500.4 447 59.5
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.5e-139 500.4 422 60.7
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 1.5e-139 500.4 428 60.5
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 4.2e-139 498.8 387 64.9
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 4.2e-139 498.8 387 64.9
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 4.2e-139 498.8 428 60.5
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 5.5e-139 498.4 445 58.4
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.2e-138 497.3 433 60.3
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.2e-138 497.3 433 60.3
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 1.6e-138 496.9 446 58.5
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 2.1e-138 496.5 441 57.1
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 4.7e-138 495.4 421 61.5
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 4.0e-137 492.3 429 57.8
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.5e-136 490.3 342 69.0
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 2.0e-136 490.0 393 62.3
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 4.4e-136 488.8 396 62.1
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 3.7e-135 485.7 427 58.8
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 8.3e-135 484.6 369 63.7
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 4.1e-134 482.3 350 66.3
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.2e-133 480.7 443 56.9
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 5.0e-132 475.3 436 57.6
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.5e-132 474.9 441 56.5
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.1e-131 474.2 442 57.0
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.5e-131 473.8 359 64.9
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.8e-129 466.8 352 63.6
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 5.9e-125 451.8 438 55.9
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 7.7e-125 451.4 354 62.7
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.1e-123 447.6 327 65.7
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.5e-123 447.2 319 67.7
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 8.3e-111 404.8 362 58.6
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 6.0e-109 398.7 440 49.1
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.9e-102 377.1 331 57.7
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.9e-102 377.1 331 57.7
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.0e-100 371.3 391 52.4
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 2.3e-100 370.2 427 48.0
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 6.4e-95 352.1 380 48.2
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 2.6e-72 276.9 225 60.4
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 7.4e-67 258.8 374 43.0
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 2.8e-66 256.9 185 65.9
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.1e-61 240.7 242 51.2
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.8e-60 237.7 142 74.6
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.2e-56 224.9 164 64.6
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 4.3e-51 206.5 257 44.7
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.0e-39 166.4 107 72.0
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.8e-34 150.6 214 42.1
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 4.2e-30 136.7 144 54.9
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 9.4e-30 135.6 172 50.0
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.2e-29 135.2 99 61.6
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.0e-28 132.1 172 49.4
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 7.5e-11 72.8 51 66.7
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 1.7e-07 61.6 54 48.1


User provided reference genes

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