Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 3.9e-249 864.4 444 100.0
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.3e-169 599.4 413 73.1
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 3.9e-169 598.6 443 72.2
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 2.0e-168 596.3 425 73.2
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 6.3e-167 591.3 420 73.1
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 8.2e-167 590.9 420 72.6
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 5.3e-166 588.2 422 72.5
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 3.5e-165 585.5 417 71.9
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 3.5e-165 585.5 439 71.5
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.3e-164 583.6 421 71.5
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 6.5e-164 581.3 415 71.3
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 8.5e-164 580.9 438 68.0
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.9e-163 579.7 416 71.9
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.5e-163 579.3 433 70.4
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.5e-163 579.3 432 69.2
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.5e-163 578.2 417 71.2
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.6e-162 576.6 417 71.5
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.8e-161 573.2 417 71.0
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.5e-160 570.1 399 72.2
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.5e-160 570.1 416 71.2
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.5e-160 570.1 414 68.8
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 4.4e-160 568.5 410 71.2
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.4e-160 568.5 421 69.1
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 7.5e-160 567.8 416 69.7
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 7.5e-160 567.8 466 65.0
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.7e-159 566.6 418 68.7
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.2e-159 566.2 422 69.2
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 3.7e-159 565.5 425 69.2
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.3e-159 564.7 442 68.6
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 5.3e-158 561.6 440 68.2
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 7.0e-158 561.2 429 68.3
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.2e-157 560.5 427 68.6
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.6e-157 560.1 418 69.9
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.0e-157 559.7 429 68.1
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.0e-156 557.4 432 66.4
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.7e-156 556.6 432 68.5
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.9e-156 555.8 440 66.4
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 3.8e-156 555.4 423 69.3
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.1e-155 553.9 421 68.4
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.5e-155 553.5 424 68.4
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 1.9e-155 553.1 415 68.2
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 2.5e-155 552.7 429 66.7
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 3.2e-155 552.4 418 68.7
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 3.6e-154 548.9 425 67.1
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.2e-152 543.9 414 67.9
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 5.7e-152 541.6 415 66.5
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 7.5e-152 541.2 419 68.0
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 1.7e-151 540.0 339 80.5
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.8e-150 536.6 438 63.7
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 3.8e-148 528.9 378 71.2
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 5.0e-148 528.5 414 66.4
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 6.6e-148 528.1 416 68.3
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 2.5e-147 526.2 415 68.0
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 3.3e-147 525.8 429 65.5
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 4.2e-147 525.4 420 65.0
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 5.5e-147 525.0 412 66.7
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 2.1e-146 523.1 453 62.3
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.0e-145 520.8 417 67.4
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 3.0e-145 519.2 412 65.8
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 4.0e-145 518.8 423 65.2
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.2e-144 517.3 375 70.1
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.0e-144 516.5 400 69.0
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 5.7e-144 515.0 423 63.8
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 9.8e-144 514.2 420 66.9
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 2.2e-143 513.1 420 64.0
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 2.8e-143 512.7 386 66.3
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 6.3e-143 511.5 443 63.9
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.1e-142 510.8 417 64.0
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 3.1e-142 509.2 420 62.6
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 4.1e-142 508.8 424 64.2
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 7.0e-142 508.1 416 64.2
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 7.8e-141 504.6 407 62.4
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 7.8e-141 504.6 414 64.5
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.3e-140 503.8 415 61.2
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 3.9e-140 502.3 438 63.2
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.9e-140 502.3 459 59.9
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 6.6e-140 501.5 467 59.3
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.6e-140 501.1 463 59.4
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.1e-139 500.7 464 60.3
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.1e-139 500.7 426 63.1
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.1e-139 500.7 451 60.5
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.1e-139 500.7 430 61.2
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.9e-139 500.0 404 65.6
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.5e-139 499.6 463 59.2
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 3.3e-139 499.2 418 63.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.3e-139 499.2 443 61.6
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.1e-138 496.5 379 67.8
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 2.8e-138 496.1 422 62.1
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 6.1e-138 495.0 402 64.9
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 6.1e-138 495.0 437 62.5
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 1.0e-137 494.2 370 70.0
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 8.9e-137 491.1 448 57.1
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 8.9e-137 491.1 431 61.5
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 1.5e-136 490.3 429 61.3
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.4e-136 489.2 442 60.2
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.3e-135 487.3 439 60.8
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 2.2e-135 486.5 325 74.5
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 4.9e-135 485.3 431 61.5
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.4e-134 483.8 425 61.2
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-134 483.4 430 61.4
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 1.9e-134 483.4 422 61.4
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 2.4e-134 483.0 395 62.5
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 4.1e-134 482.3 425 61.2
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 4.1e-134 482.3 379 66.8
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-133 480.7 425 60.7
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 2.0e-133 479.9 483 56.9
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 4.6e-133 478.8 401 61.3
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-128 462.6 407 60.2
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.7e-127 460.3 429 60.1
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.2e-125 454.1 407 59.0
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 2.1e-125 453.4 398 61.3
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 9.5e-123 444.5 387 59.2
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.2e-122 444.1 356 67.7
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 6.8e-121 438.3 389 59.6
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 7.5e-120 434.9 413 55.9
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.7e-119 433.7 402 57.2
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 2.2e-119 433.3 397 59.2
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 2.9e-119 433.0 320 67.5
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.7e-119 432.6 419 58.0
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 4.9e-119 432.2 413 55.7
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 7.1e-118 428.3 398 56.5
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 3.9e-116 422.5 398 56.0
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 8.6e-116 421.4 399 58.6
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 4.3e-115 419.1 422 54.5
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 5.6e-115 418.7 374 58.3
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.1e-113 414.5 421 52.0
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.6e-112 409.8 468 51.1
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.0e-108 397.9 432 54.4
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 1.4e-105 387.5 299 64.2
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.4e-105 386.7 280 68.9
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.8e-104 382.1 238 77.7
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.4e-102 377.5 401 50.4
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 1.0e-100 371.3 271 69.0
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 3.9e-100 369.4 343 57.7
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-94 350.5 375 51.5
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-92 344.4 375 49.6
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 5.1e-92 342.4 374 49.5
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 8.7e-92 341.7 457 44.4
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.1e-91 341.3 352 52.3
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.3e-91 339.3 404 47.5
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 4.8e-90 335.9 268 63.8
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.0e-88 330.5 379 48.5
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.6e-88 330.1 379 48.5
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 3.4e-88 329.7 375 48.8
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 6.0e-85 318.9 399 45.9
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 7.9e-85 318.5 270 63.7
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.5e-83 314.3 353 51.3
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 9.6e-83 311.6 352 49.4
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.5e-75 287.7 346 47.1
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 2.2e-71 273.9 186 73.7
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.4e-57 228.0 469 35.2
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 1.5e-51 208.0 420 36.4
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 5.7e-51 206.1 420 36.2
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.8e-49 201.1 153 65.4
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.9e-46 191.0 194 50.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 3.6e-45 186.8 125 70.4
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.0e-39 168.7 145 62.1
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.2e-35 155.2 94 77.7
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.8e-34 150.6 166 48.8
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.5e-27 128.3 133 54.9
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.5e-27 128.3 119 53.8
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 3.4e-27 127.1 144 53.5
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 5.7e-27 126.3 84 70.2
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.2e-24 118.6 131 46.6
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.6e-24 118.2 201 42.8
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 2.9e-23 114.0 99 52.5
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.2e-21 108.6 129 51.2
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 3.6e-21 107.1 94 54.3
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 8.0e-21 105.9 67 76.1
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.4e-20 105.1 101 51.5
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-20 104.8 94 54.3
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.3e-20 104.4 311 31.2
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 9.2e-17 92.4 95 57.9
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 1.5e-14 85.1 197 33.0
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 2.3e-12 77.8 97 44.3
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 4.0e-12 77.0 190 35.8
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 2.0e-11 74.7 57 64.9
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 4.1e-09 67.0 54 50.0
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 4.1e-09 67.0 54 50.0
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 2.1e-08 64.7 41 68.3
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.0e-07 62.4 39 74.4
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 6.6e-07 59.7 84 41.7
SHI14588 Sapria himalayana HOM05D003649 ORTHO05D004498 1.9e-06 58.2 42 69.0
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 9.5e-06 55.8 63 52.4


User provided reference genes

Program Settings