Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 0.0e+00 1261.1 629 100.0
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 8.1e-253 877.1 637 68.8
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 3.5e-248 861.7 630 67.6
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 2.5e-246 855.5 633 67.6
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 2.1e-245 852.4 636 67.0
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 1.1e-244 850.1 639 67.3
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 1.8e-244 849.4 633 65.4
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 6.9e-244 847.4 636 66.5
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 6.9e-244 847.4 636 67.0
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 2.0e-243 845.9 625 66.6
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 4.5e-243 844.7 631 66.6
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 1.3e-242 843.2 630 66.5
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 2.2e-242 842.4 631 65.5
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 3.8e-242 841.6 627 66.7
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 3.2e-241 838.6 644 66.3
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 2.1e-240 835.9 645 65.9
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 2.7e-240 835.5 634 66.1
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 1.1e-238 830.1 639 64.8
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.5e-238 829.7 639 66.0
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 5.7e-238 827.8 632 65.7
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 7.4e-238 827.4 639 64.6
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.3e-237 826.6 669 62.8
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.3e-237 826.6 658 63.7
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 3.7e-237 825.1 641 64.7
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 4.8e-237 824.7 631 64.5
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 5.0e-234 814.7 631 64.7
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.1e-233 813.5 655 63.2
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 1.4e-233 813.1 636 64.3
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.4e-233 813.1 655 63.2
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 4.2e-233 811.6 633 64.6
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 5.5e-233 811.2 641 64.1
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.0e-231 807.0 606 65.7
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 1.0e-231 807.0 636 63.7
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 3.0e-231 805.4 629 64.4
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 3.9e-231 805.1 640 62.8
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 3.9e-231 805.1 641 63.5
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 1.1e-230 803.5 628 64.3
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 1.1e-230 803.5 635 64.9
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 2.6e-230 802.4 646 62.8
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 5.7e-230 801.2 632 63.8
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.3e-229 800.0 634 63.9
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.7e-229 799.7 636 63.2
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 2.8e-229 798.9 639 62.6
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 4.8e-229 798.1 629 63.3
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 1.1e-228 797.0 638 65.0
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 9.1e-228 793.9 630 63.7
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.2e-227 793.5 631 64.5
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 2.6e-227 792.3 636 63.7
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 3.4e-227 792.0 631 64.3
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 5.9e-227 791.2 645 63.9
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 7.7e-227 790.8 634 63.7
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 1.0e-226 790.4 664 61.4
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.3e-226 790.0 638 62.7
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 5.0e-226 788.1 629 63.3
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 6.5e-226 787.7 644 60.1
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 8.5e-226 787.3 638 64.3
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 1.9e-225 786.2 640 61.6
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.9e-225 786.2 630 62.9
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 2.5e-225 785.8 635 63.9
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 3.2e-225 785.4 629 62.8
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 4.2e-225 785.0 653 61.3
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 5.5e-225 784.6 636 62.1
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 1.2e-224 783.5 634 62.9
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 1.6e-224 783.1 643 62.1
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 6.1e-224 781.2 632 63.0
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 1.0e-223 780.4 631 62.4
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 3.9e-223 778.5 633 61.6
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 5.2e-223 778.1 632 63.0
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 8.8e-223 777.3 626 61.8
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 2.6e-222 775.8 631 61.5
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 2.6e-222 775.8 643 61.4
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 7.4e-222 774.2 626 62.8
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 7.4e-222 774.2 633 61.9
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 1.6e-219 766.5 626 61.3
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 7.7e-219 764.2 635 62.8
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 1.0e-218 763.8 633 61.5
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 8.5e-218 760.8 647 59.8
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 4.0e-215 751.9 656 59.3
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 4.0e-215 751.9 640 59.2
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 6.7e-215 751.1 635 61.3
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 1.5e-214 750.0 577 65.9
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 7.5e-214 747.7 641 59.1
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 7.5e-214 747.7 641 59.1
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 9.7e-214 747.3 680 57.1
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 8.3e-205 717.6 628 58.0
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 1.0e-194 684.1 630 57.8
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 2.0e-190 669.8 595 57.3
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 4.1e-188 662.1 498 64.7
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 3.0e-186 656.0 443 72.9
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 1.3e-178 630.6 544 59.6
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 1.3e-173 614.0 622 52.4
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 7.8e-171 604.7 628 53.2
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 1.1e-169 600.9 622 51.1
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 1.6e-160 570.5 595 50.8
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 5.4e-156 555.4 506 55.5
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 2.5e-145 520.0 426 61.3
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 2.1e-144 516.9 347 71.8
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 2.5e-129 466.8 469 52.0
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 4.3e-129 466.1 320 70.6
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 5.3e-127 459.1 322 69.9
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 1.8e-103 380.9 407 50.6
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 5.6e-76 289.7 268 57.1
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 1.6e-67 261.5 176 70.5
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 4.0e-66 256.9 179 72.1
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 5.2e-58 229.9 190 61.1
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 1.4e-55 221.9 198 59.1
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 1.2e-51 208.8 176 62.5
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 2.9e-48 197.6 133 75.9
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 6.4e-48 196.4 181 55.8
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 1.3e-45 188.7 126 70.6
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 7.3e-36 156.4 175 49.7
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 2.9e-24 117.9 95 60.0
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 3.8e-24 117.5 66 78.8
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 3.2e-23 114.4 68 76.5
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 1.9e-20 105.1 81 61.7
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 1.9e-20 105.1 108 53.7


User provided reference genes

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