Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 1.4e-182 642.9 331 100.0
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 5.2e-166 587.8 331 90.9
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 5.2e-166 587.8 331 90.9
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 5.2e-166 587.8 331 90.9
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 1.5e-165 586.3 331 90.6
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 9.8e-165 583.6 331 90.0
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.0e-161 573.5 329 86.9
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 1.3e-161 573.2 329 86.9
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 3.9e-161 571.6 329 86.9
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 5.6e-160 567.8 329 86.9
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 3.1e-158 562.0 327 86.9
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 3.1e-158 562.0 328 86.0
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 4.0e-158 561.6 329 85.4
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 6.8e-158 560.8 327 86.9
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 8.9e-158 560.5 325 87.1
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 2.6e-157 558.9 327 85.9
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.6e-157 558.9 328 85.4
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 3.4e-157 558.5 327 86.2
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 3.4e-157 558.5 330 85.2
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 4.4e-157 558.1 327 86.2
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 7.5e-157 557.4 327 85.9
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 7.5e-157 557.4 328 85.1
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 9.8e-157 557.0 327 85.3
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 9.8e-157 557.0 326 86.5
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 8.3e-156 553.9 327 85.0
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 1.1e-155 553.5 327 84.7
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 1.1e-155 553.5 327 84.7
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.4e-155 553.1 327 85.9
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.9e-155 552.7 329 85.7
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.9e-155 552.7 329 85.7
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 2.4e-155 552.4 327 84.7
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 4.1e-155 551.6 327 85.0
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 4.1e-155 551.6 327 84.4
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 5.4e-155 551.2 327 84.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 1.2e-154 550.1 327 84.1
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 1.2e-154 550.1 327 85.0
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 6.0e-154 547.7 325 84.9
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 6.0e-154 547.7 330 83.9
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 7.8e-154 547.4 328 84.5
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.0e-153 547.0 327 83.8
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.3e-153 546.6 327 83.5
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 1.7e-153 546.2 330 83.3
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 2.3e-153 545.8 325 85.2
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 3.9e-153 545.0 330 82.7
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 5.0e-153 544.7 326 84.0
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 6.6e-153 544.3 327 83.5
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 6.6e-153 544.3 328 84.1
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 8.6e-153 543.9 327 84.1
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.1e-152 543.5 354 78.8
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 2.5e-152 542.3 328 83.2
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.3e-152 541.6 326 84.4
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.3e-152 541.6 326 83.7
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 7.3e-152 540.8 327 84.1
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 7.3e-152 540.8 327 83.2
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 7.3e-152 540.8 327 84.1
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.6e-151 539.7 327 82.9
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 1.6e-151 539.7 327 84.1
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 2.1e-151 539.3 327 84.1
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.7e-151 538.1 327 82.9
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 4.7e-151 538.1 327 83.2
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 8.1e-151 537.3 327 83.2
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.1e-150 537.0 327 83.5
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 4.0e-150 535.0 327 82.6
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 5.2e-150 534.6 327 83.5
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 6.8e-150 534.3 327 83.2
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 6.8e-150 534.3 327 83.2
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 1.2e-149 533.5 333 82.6
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.2e-149 533.5 327 82.3
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 2.0e-149 532.7 327 82.0
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 3.4e-149 531.9 327 82.0
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 3.4e-149 531.9 327 82.0
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 4.4e-149 531.6 327 82.3
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 4.4e-149 531.6 327 82.3
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 4.4e-149 531.6 381 75.1
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 7.5e-149 530.8 327 82.0
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 9.8e-149 530.4 367 76.6
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 9.8e-149 530.4 329 81.5
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.7e-148 529.6 327 81.3
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.7e-148 529.6 327 81.3
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.7e-148 529.6 327 81.3
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.7e-148 529.6 327 81.3
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 2.9e-148 528.9 329 81.2
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 3.7e-148 528.5 327 81.7
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 8.3e-148 527.3 327 81.3
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 1.1e-147 526.9 325 81.8
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 4.6e-146 521.5 327 80.7
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 3.9e-145 518.5 327 81.7
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.9e-145 518.5 305 84.6
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-144 516.2 327 80.1
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.2e-143 513.5 327 79.8
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.2e-143 513.5 327 80.7
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 6.2e-143 511.1 327 78.9
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.1e-142 510.4 300 84.3
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.4e-142 510.0 314 81.2
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 8.9e-142 507.3 451 62.1
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 8.9e-142 507.3 325 78.5
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 1.2e-141 506.9 328 79.9
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 4.9e-140 501.5 327 78.0
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 4.6e-138 495.0 327 77.7
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 4.6e-138 495.0 327 76.1
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 3.0e-137 492.3 328 77.1
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 6.2e-135 484.6 327 77.7
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 6.2e-135 484.6 327 75.8
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.8e-134 483.0 326 74.8
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.3e-132 476.9 330 74.2
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.6e-130 468.4 296 81.4
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.3e-129 466.1 326 74.8
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.3e-127 460.3 373 67.3
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.1e-127 459.5 327 74.6
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 3.1e-126 455.7 328 74.1
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 5.8e-125 451.4 332 72.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.6e-122 443.4 279 78.9
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 5.8e-117 424.9 323 70.3
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 1.1e-110 404.1 324 61.4
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 4.9e-108 395.2 326 62.3
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 3.2e-107 392.5 234 83.3
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 7.1e-107 391.3 318 61.3
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.9e-105 385.6 233 82.0
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 7.4e-96 354.8 313 62.0
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.3e-95 354.0 272 68.0
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.7e-92 343.6 327 62.1
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 3.6e-90 335.9 197 85.3
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 1.3e-87 327.4 234 69.2
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 2.8e-87 326.2 224 73.7
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 3.8e-84 315.8 220 75.5
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 5.0e-84 315.5 333 56.5
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.2e-82 310.8 167 91.6
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 2.1e-82 310.1 220 73.6
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 4.1e-78 295.8 220 72.3
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 5.7e-72 275.4 333 43.5
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 9.4e-67 258.1 163 79.1
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 1.3e-63 247.7 160 78.1
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.8e-62 243.8 267 53.2
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 3.1e-62 243.0 327 48.3
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 2.8e-55 219.9 131 82.4
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 9.5e-51 204.9 131 78.6
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 8.3e-39 165.2 99 81.8
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 3.2e-38 163.3 196 48.0
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 2.0e-37 160.6 160 55.6
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 7.8e-37 158.7 210 47.1
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 2.1e-34 150.6 103 71.8
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 8.9e-33 145.2 87 85.1
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.1e-30 138.3 83 79.5
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 5.4e-30 136.0 88 76.1
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 9.2e-30 135.2 80 83.8
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.3e-28 131.3 77 85.7
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 1.9e-27 127.5 74 83.8
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 2.5e-27 127.1 86 79.1
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 1.6e-26 124.4 69 82.6
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 2.2e-23 114.0 84 69.0
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 1.4e-22 111.3 72 77.8
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.4e-22 110.5 75 72.0
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 3.0e-20 103.6 63 81.0
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 5.6e-19 99.4 62 82.3
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 3.4e-16 90.1 61 77.0
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 3.6e-10 70.1 85 51.8
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 3.4e-08 63.5 46 65.2
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 6.4e-07 59.3 36 75.0


User provided reference genes

Program Settings