Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 2.4e-160 568.9 318 100.0
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 2.5e-72 276.6 243 61.7
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 4.2e-72 275.8 302 53.3
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 3.9e-70 269.2 305 50.8
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 2.4e-67 260.0 304 49.7
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 7.7e-66 255.0 293 49.8
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 1.0e-65 254.6 305 48.5
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 1.9e-64 250.4 300 48.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 4.2e-64 249.2 292 50.0
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 4.7e-63 245.7 296 49.3
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 5.1e-62 242.3 296 48.6
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.1e-61 241.1 307 45.6
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 5.7e-61 238.8 311 47.9
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 9.7e-61 238.0 295 48.5
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.7e-60 237.3 308 46.4
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 4.8e-60 235.7 304 46.7
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 6.3e-60 235.3 301 46.5
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.8e-59 233.8 268 50.4
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 4.1e-59 232.6 290 48.3
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 4.1e-59 232.6 295 45.1
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 7.0e-59 231.9 301 48.2
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.2e-58 231.1 282 50.0
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.2e-58 231.1 286 49.0
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 3.5e-58 229.6 296 45.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 4.5e-58 229.2 291 48.1
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 5.9e-58 228.8 324 44.1
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 1.0e-57 228.0 295 46.4
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 1.3e-57 227.6 289 45.7
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.9e-57 226.5 306 43.5
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 3.8e-57 226.1 302 46.4
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 6.5e-57 225.3 295 46.8
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 8.5e-57 224.9 293 45.4
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 1.9e-56 223.8 303 45.9
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 4.2e-56 222.6 287 47.0
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.2e-56 222.6 299 47.5
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 5.5e-56 222.2 297 44.4
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 7.2e-56 221.9 302 43.4
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.2e-55 221.1 302 45.4
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 3.6e-55 219.5 284 49.3
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 4.7e-55 219.2 292 45.5
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 8.0e-55 218.4 308 43.5
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 8.0e-55 218.4 299 46.8
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 2.3e-54 216.9 280 49.3
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 2.3e-54 216.9 302 44.7
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.9e-54 216.1 299 44.8
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 3.9e-54 216.1 270 48.9
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.9e-54 216.1 308 42.5
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 6.7e-54 215.3 287 46.3
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 8.8e-54 214.9 276 48.6
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 8.8e-54 214.9 301 44.5
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 8.8e-54 214.9 311 44.7
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 8.8e-54 214.9 303 44.2
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.1e-53 214.5 296 43.6
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 1.5e-53 214.2 306 44.8
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.6e-53 213.4 311 43.7
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 2.6e-53 213.4 301 44.2
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 2.6e-53 213.4 299 44.8
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.3e-53 213.0 301 44.2
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.3e-53 213.0 299 43.1
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.7e-53 212.2 301 43.9
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 5.7e-53 212.2 289 46.4
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 7.4e-53 211.8 301 44.5
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 2.2e-52 210.3 296 44.6
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.2e-52 210.3 302 45.0
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.2e-52 210.3 279 44.8
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.8e-52 209.9 299 45.8
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 3.7e-52 209.5 324 41.4
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 3.7e-52 209.5 296 44.9
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 3.7e-52 209.5 269 46.8
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 4.8e-52 209.1 254 48.4
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 6.3e-52 208.8 297 45.1
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.8e-51 207.2 246 50.4
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 5.3e-51 205.7 302 42.4
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 7.0e-51 205.3 302 43.4
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.0e-50 203.8 277 44.4
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.6e-50 203.4 265 44.2
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 4.5e-50 202.6 288 43.8
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 5.9e-50 202.2 291 45.0
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.0e-49 201.4 282 44.7
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 1.3e-49 201.1 270 45.2
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.8e-49 199.5 296 43.9
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.1e-48 198.0 298 43.0
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 2.5e-48 196.8 299 42.1
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.5e-48 196.8 285 44.6
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 4.2e-48 196.1 281 41.3
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 4.2e-48 196.1 290 43.4
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.7e-47 193.4 270 45.2
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 3.6e-47 193.0 289 45.3
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.0e-46 189.9 282 43.6
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 6.7e-46 188.7 271 43.2
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.5e-45 187.6 303 38.9
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.3e-45 186.4 265 45.3
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 7.5e-45 185.3 303 38.0
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 1.7e-44 184.1 270 43.3
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 2.2e-44 183.7 244 46.3
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 3.7e-44 183.0 289 41.9
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 6.3e-44 182.2 303 38.6
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.4e-43 181.0 286 43.7
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 1.8e-43 180.6 303 38.3
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 3.1e-43 179.9 276 42.4
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 9.1e-43 178.3 276 40.2
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.5e-42 176.4 276 39.5
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 5.9e-42 175.6 277 39.7
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 7.7e-42 175.3 279 39.1
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 1.0e-41 174.9 297 41.1
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 1.3e-41 174.5 268 40.3
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.3e-41 174.5 299 38.5
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.7e-41 174.1 302 37.4
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.2e-41 173.7 265 43.0
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 5.0e-41 172.6 306 37.6
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 5.0e-41 172.6 281 39.5
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 6.5e-41 172.2 277 40.4
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 8.5e-41 171.8 289 39.8
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.1e-40 171.4 276 39.5
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.1e-40 171.4 276 39.5
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.5e-40 171.0 243 41.2
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 1.9e-40 170.6 276 39.9
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 1.9e-40 170.6 276 39.9
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 3.2e-40 169.9 292 37.7
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.2e-40 169.9 287 42.5
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 3.2e-40 169.9 284 39.8
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 4.2e-40 169.5 304 36.8
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 5.5e-40 169.1 276 40.6
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.7e-39 166.8 285 42.1
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 4.7e-39 166.0 279 39.1
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 2.3e-38 163.7 267 39.3
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.5e-37 161.0 274 38.3
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 2.0e-37 160.6 244 43.0
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 7.5e-37 158.7 285 40.0
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 1.4e-35 154.5 245 41.2
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.8e-35 154.1 267 39.3
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 4.1e-35 152.9 276 37.3
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.6e-34 151.0 252 41.3
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 4.5e-34 149.4 276 36.2
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 4.5e-34 149.4 276 36.2
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 7.7e-34 148.7 226 44.7
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 5.0e-33 146.0 268 37.3
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 5.0e-33 146.0 276 36.6
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 5.0e-33 146.0 299 33.4
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 4.2e-32 142.9 279 36.9
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 5.5e-32 142.5 297 34.3
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.2e-31 141.4 308 36.4
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.2e-31 141.4 295 38.3
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 1.6e-31 141.0 241 36.1
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 3.6e-31 139.8 303 36.0
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 1.8e-30 137.5 283 36.4
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 5.2e-30 136.0 270 36.7
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 3.4e-29 133.3 281 37.7
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 5.7e-29 132.5 284 35.2
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 1.7e-28 131.0 275 35.3
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.7e-28 131.0 275 35.3
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 2.2e-28 130.6 274 36.9
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 3.1e-27 126.7 291 34.0
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 5.0e-25 119.4 294 34.0
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 4.3e-24 116.3 296 30.4
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 7.3e-24 115.5 293 31.7
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.8e-22 110.9 212 35.4
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.2e-21 108.2 120 48.3
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 3.4e-21 106.7 281 31.7
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 9.8e-21 105.1 154 42.9
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 4.1e-19 99.8 273 33.0
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 2.7e-18 97.1 229 31.0
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 3.5e-18 96.7 339 29.5
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 1.0e-17 95.1 229 32.8
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 3.9e-17 93.2 254 32.3
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.9e-17 93.2 258 30.2
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 5.6e-16 89.4 239 31.0
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 9.5e-16 88.6 238 31.9
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.3e-14 84.0 91 48.4
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 2.6e-13 80.5 277 24.9
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 9.8e-13 78.6 269 28.6
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 4.9e-12 76.3 65 52.3
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 4.9e-12 76.3 65 52.3
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 6.4e-12 75.9 277 25.6
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.9e-11 74.3 89 47.2
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 1.9e-11 74.3 274 27.4
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 2.4e-11 73.9 63 50.8
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 2.4e-11 73.9 63 50.8
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 4.1e-11 73.2 89 47.2
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 1.2e-07 61.6 213 25.8
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.8e-07 60.5 79 43.0
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 2.8e-07 60.5 227 25.1
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.1e-06 58.5 133 33.1


User provided reference genes

Program Settings