Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc26g0000250 Simmondsia chinensis HOM05D001755 ORTHO05D001665 3.6e-24 114.0 54 100.0
arahy.Tifrunner.gnm1.ann1.IVYM6W Arachis hypogaea HOM05D001755 ORTHO05D001665 1.2e-22 109.0 54 94.4
Solyc12g087895.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.2e-22 109.0 53 92.5
TPR.G18441 Trifolium pratense HOM05D001755 ORTHO05D001665 2.0e-22 108.2 54 92.6
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 3.4e-22 107.5 53 94.3
LjContig00408g0004832 Lotus japonicus HOM05D001755 ORTHO05D001665 4.4e-22 107.1 54 92.6
Psat2g065840 Pisum sativum HOM05D001755 ORTHO05D001665 4.4e-22 107.1 54 90.7
Potri.002G103400 Populus trichocarpa HOM05D001755 ORTHO05D001665 4.4e-22 107.1 54 90.7
Potri.005G158000 Populus trichocarpa HOM05D001755 ORTHO05D001665 4.4e-22 107.1 54 90.7
Glyma.04G093000 Glycine max HOM05D001755 ORTHO05D001665 7.5e-22 106.3 54 92.6
Oeu049223.1 Olea europaea HOM05D001755 ORTHO05D001665 7.5e-22 106.3 54 88.9
Phvul.009G038300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 7.5e-22 106.3 54 92.6
Dinv44836 Davidia involucrata HOM05D001755 ORTHO05D001665 9.8e-22 105.9 53 92.5
Manes.02G146800 Manihot esculenta HOM05D001755 ORTHO05D001665 1.7e-21 105.1 54 88.9
Medtr5g065670 Medicago truncatula HOM05D001755 ORTHO05D001665 1.7e-21 105.1 53 90.6
Nn5g29940 Nelumbo nucifera HOM05D001755 ORTHO05D001665 1.7e-21 105.1 54 90.7
TAR381G0451 Trochodendron aralioides HOM05D001755 ORTHO05D001665 1.7e-21 105.1 54 90.7
MBI02_g18287_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 2.2e-21 104.8 53 90.6
CiPaw.07G168100 Carya illinoinensis HOM05D001755 ORTHO05D001665 2.8e-21 104.4 54 88.9
CiPaw.08G054200 Carya illinoinensis HOM05D001755 ORTHO05D001665 2.8e-21 104.4 54 88.9
Glyma.14G180100 Glycine max HOM05D001755 ORTHO05D001665 2.8e-21 104.4 54 92.6
ClCG00G003730 Citrullus lanatus HOM05D001755 ORTHO05D001665 3.7e-21 104.0 54 88.9
ClCG08G011500 Citrullus lanatus HOM05D001755 ORTHO05D001665 3.7e-21 104.0 54 88.9
Glyma.02G212300 Glycine max HOM05D001755 ORTHO05D001665 3.7e-21 104.0 54 92.6
Peaxi162Scf00160g01119 Petunia axillaris HOM05D001755 ORTHO05D001665 3.7e-21 104.0 53 88.7
CiPaw.05G031100 Carya illinoinensis HOM05D001755 ORTHO05D001665 4.8e-21 103.6 54 90.7
Sed0014860 Sechium edule HOM05D001755 ORTHO05D001665 4.8e-21 103.6 54 90.7
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 6.3e-21 103.2 53 88.7
vmacro21312 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 6.3e-21 103.2 54 88.9
CAN.G1658.7 Capsicum annuum HOM05D001755 ORTHO05D001665 8.3e-21 102.8 54 88.9
MD08G1193000 Malus domestica HOM05D001755 ORTHO05D001665 8.3e-21 102.8 54 88.9
Prupe.1G527700 Prunus persica HOM05D001755 ORTHO05D001665 8.3e-21 102.8 54 88.9
Gohir.D05G267450 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.1e-20 102.4 54 87.0
Lalb_Chr11g0065111 Lupinus albus HOM05D001755 ORTHO05D001665 1.1e-20 102.4 54 90.7
Phvul.008G179600 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 1.1e-20 102.4 54 88.9
SEGI_04003 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 1.1e-20 102.4 53 90.6
Solyc04g076033.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.1e-20 102.4 53 88.7
arahy.Tifrunner.gnm1.ann1.KFP2BM Arachis hypogaea HOM05D001755 ORTHO05D001665 1.4e-20 102.1 53 88.7
arahy.Tifrunner.gnm1.ann1.NI9N2T Arachis hypogaea HOM05D001755 ORTHO05D001665 1.4e-20 102.1 53 88.7
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 1.4e-20 102.1 53 90.6
CSS0010978 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 1.4e-20 102.1 53 88.7
CSS0046975 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 1.4e-20 102.1 53 88.7
Gohir.A03G175950 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.4e-20 102.1 54 87.0
Gohir.D02G199750 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.4e-20 102.1 54 87.0
Gorai.005G224400 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.4e-20 102.1 54 87.0
Gorai.010G035900 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.4e-20 102.1 53 86.8
Lj1g0001104 Lotus japonicus HOM05D001755 ORTHO05D001665 1.4e-20 102.1 54 88.9
Prupe.8G067700 Prunus persica HOM05D001755 ORTHO05D001665 1.4e-20 102.1 54 88.9
Hund16874 Selenicereus undatus HOM05D001755 ORTHO05D001665 1.4e-20 102.1 53 86.8
CiPaw.06G156900 Carya illinoinensis HOM05D001755 ORTHO05D001665 1.8e-20 101.7 54 88.9
Lalb_Chr04g0252981 Lupinus albus HOM05D001755 ORTHO05D001665 1.8e-20 101.7 54 87.0
Lalb_Chr08g0242371 Lupinus albus HOM05D001755 ORTHO05D001665 1.8e-20 101.7 54 88.9
MD04G1047500 Malus domestica HOM05D001755 ORTHO05D001665 1.8e-20 101.7 54 87.0
Thecc.02G132000 Theobroma cacao HOM05D001755 ORTHO05D001665 1.8e-20 101.7 54 87.0
EL10Ac9g22086 Beta vulgaris HOM05D001755 ORTHO05D001665 2.4e-20 101.3 53 84.9
Manes.18G061200 Manihot esculenta HOM05D001755 ORTHO05D001665 2.4e-20 101.3 54 87.0
Nitab4.5_0002025g0030 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.4e-20 101.3 51 90.2
Nitab4.5_0004381g0040 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.4e-20 101.3 51 90.2
vmacro04680 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 2.4e-20 101.3 54 87.0
ATR0022G040 Amborella trichopoda HOM05D001755 ORTHO05D001665 3.1e-20 100.9 54 87.0
Dinv24160 Davidia involucrata HOM05D001755 ORTHO05D001665 3.1e-20 100.9 53 86.8
Migut.B00565 Erythranthe guttata HOM05D001755 ORTHO05D001665 3.1e-20 100.9 54 85.2
Gohir.A05G221300 Gossypium hirsutum HOM05D001755 ORTHO05D001665 3.1e-20 100.9 53 84.9
Gohir.A05G265200 Gossypium hirsutum HOM05D001755 ORTHO05D001665 3.1e-20 100.9 54 85.2
Gohir.D05G224000 Gossypium hirsutum HOM05D001755 ORTHO05D001665 3.1e-20 100.9 53 84.9
Gorai.009G231400 Gossypium raimondii HOM05D001755 ORTHO05D001665 3.1e-20 100.9 53 84.9
Nitab4.5_0011953g0010 Nicotiana tabacum HOM05D001755 ORTHO05D001665 3.1e-20 100.9 53 86.8
Rhsim05G0102500 Rhododendron simsii HOM05D001755 ORTHO05D001665 3.1e-20 100.9 53 88.7
ClCG09G015900 Citrullus lanatus HOM05D001755 ORTHO05D001665 4.1e-20 100.5 54 87.0
CsaV3_7G007020 Cucumis sativus L. HOM05D001755 ORTHO05D001665 4.1e-20 100.5 54 87.0
MD15G1381800 Malus domestica HOM05D001755 ORTHO05D001665 4.1e-20 100.5 54 87.0
ClCG10G009540 Citrullus lanatus HOM05D001755 ORTHO05D001665 5.4e-20 100.1 53 86.8
Potri.007G112900 Populus trichocarpa HOM05D001755 ORTHO05D001665 5.4e-20 100.1 54 88.9
Sabra07G0092200 Salix brachista HOM05D001755 ORTHO05D001665 5.4e-20 100.1 53 88.7
Dinv15987 Davidia involucrata HOM05D001755 ORTHO05D001665 7.0e-20 99.8 53 88.7
Glyma.06G094800 Glycine max HOM05D001755 ORTHO05D001665 7.0e-20 99.8 57 86.0
Phvul.006G203500 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 9.1e-20 99.4 54 87.0
SGA_v2.0_scaffold219G42570 Striga asiatica HOM05D001755 ORTHO05D001665 9.1e-20 99.4 54 87.0
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.6e-19 98.6 51 88.2
Migut.L01932 Erythranthe guttata HOM05D001755 ORTHO05D001665 1.6e-19 98.6 54 83.3
Lalb_Chr17g0344421 Lupinus albus HOM05D001755 ORTHO05D001665 1.6e-19 98.6 54 90.7
Potri.017G047932 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.6e-19 98.6 54 85.2
Sed0017446 Sechium edule HOM05D001755 ORTHO05D001665 1.6e-19 98.6 54 85.2
arahy.Tifrunner.gnm1.ann1.KCV3PX Arachis hypogaea HOM05D001755 ORTHO05D001665 2.0e-19 98.2 54 87.0
Duzib132G0573 Durio zibethinus HOM05D001755 ORTHO05D001665 2.0e-19 98.2 54 83.3
FAN08G0378 Fragaria x ananassa HOM05D001755 ORTHO05D001665 2.0e-19 98.2 54 83.3
Oeu022087.1 Olea europaea HOM05D001755 ORTHO05D001665 2.0e-19 98.2 54 83.3
RcHm_v2.0_Chr7g0237501 Rosa chinensis HOM05D001755 ORTHO05D001665 2.0e-19 98.2 54 83.3
arahy.Tifrunner.gnm1.ann1.ZL8253 Arachis hypogaea HOM05D001755 ORTHO05D001665 2.7e-19 97.8 53 86.8
CAN.G523.28 Capsicum annuum HOM05D001755 ORTHO05D001665 2.7e-19 97.8 54 85.2
Hma1.2p1_0010F.1_g007000 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 2.7e-19 97.8 53 83.0
Manes.10G102000 Manihot esculenta HOM05D001755 ORTHO05D001665 2.7e-19 97.8 54 85.2
Ciclev10006528m.g Citrus clementina HOM05D001755 ORTHO05D001665 3.5e-19 97.4 54 85.2
Manes.07G036900 Manihot esculenta HOM05D001755 ORTHO05D001665 3.5e-19 97.4 54 83.3
Glyma.15G056700 Glycine max HOM05D001755 ORTHO05D001665 4.5e-19 97.1 54 85.2
HanXRQChr05g0163291 Helianthus annuus HOM05D001755 ORTHO05D001665 4.5e-19 97.1 54 83.3
HanXRQChr05g0163551 Helianthus annuus HOM05D001755 ORTHO05D001665 4.5e-19 97.1 54 83.3
vmacro19953 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 4.5e-19 97.1 51 88.2
Dinv42637 Davidia involucrata HOM05D001755 ORTHO05D001665 5.9e-19 96.7 51 86.3
Actinidia33109 Actinidia chinensis HOM05D001755 ORTHO05D001665 7.7e-19 96.3 51 86.3
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 7.7e-19 96.3 54 83.3
Glyma.07G181100 Glycine max HOM05D001755 ORTHO05D001665 7.7e-19 96.3 54 85.2
Sed0003373 Sechium edule HOM05D001755 ORTHO05D001665 7.7e-19 96.3 54 83.3
SGA_v2.0_scaffold145G36024 Striga asiatica HOM05D001755 ORTHO05D001665 7.7e-19 96.3 53 83.0
Sed0017055 Sechium edule HOM05D001755 ORTHO05D001665 1.0e-18 95.9 54 81.5
Solyc01g105700.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.3e-18 95.5 54 83.3
SGA_v2.0_scaffold14G07146 Striga asiatica HOM05D001755 ORTHO05D001665 1.3e-18 95.5 53 83.0
Glyma.08G069600 Glycine max HOM05D001755 ORTHO05D001665 1.7e-18 95.1 54 85.2
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 1.7e-18 95.1 51 88.2
Phvul.002G211300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 2.3e-18 94.7 54 85.2
CSS0016051 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 2.9e-18 94.4 66 72.7
Lj4g0016585 Lotus japonicus HOM05D001755 ORTHO05D001665 2.9e-18 94.4 54 83.3
Sabra05G0120800 Salix brachista HOM05D001755 ORTHO05D001665 6.6e-18 93.2 76 63.2
Actinidia25389 Actinidia chinensis HOM05D001755 ORTHO05D001665 4.2e-17 90.5 45 91.1
DCAR_029187 Daucus carota HOM05D001755 ORTHO05D001665 4.2e-17 90.5 54 81.5
Lalb_Chr05g0217661 Lupinus albus HOM05D001755 ORTHO05D001665 5.5e-17 90.1 54 83.3
Nitab4.5_0001507g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 3.6e-16 87.4 46 84.8
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 4.7e-16 87.0 53 77.4
BcaC03g18258 Brassica carinata HOM05D001755 ORTHO05D001665 1.4e-15 85.5 54 74.1
BraA02t09253Z Brassica rapa HOM05D001755 ORTHO05D001665 1.8e-15 85.1 54 72.2
Carub.0008s0991 Capsella rubella HOM05D001755 ORTHO05D001665 2.3e-15 84.7 54 77.8
Oeu060039.1 Olea europaea HOM05D001755 ORTHO05D001665 2.3e-15 84.7 52 78.8
MBI06_g42716_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 3.0e-15 84.3 42 92.9
arahy.Tifrunner.gnm1.ann1.0E4ZKW Arachis hypogaea HOM05D001755 ORTHO05D001665 5.2e-15 83.6 41 90.2
arahy.Tifrunner.gnm1.ann1.FV0XI2 Arachis hypogaea HOM05D001755 ORTHO05D001665 5.2e-15 83.6 41 90.2
Thhalv10005432m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 6.8e-15 83.2 54 72.2
Aa31LG1G17560 Aethionema arabicum HOM05D001755 ORTHO05D001665 1.5e-14 82.0 53 69.8
Carub.0008s2514 Capsella rubella HOM05D001755 ORTHO05D001665 1.5e-14 82.0 54 70.4
TAR628G0605 Trochodendron aralioides HOM05D001755 ORTHO05D001665 2.0e-14 81.6 41 90.2
AUR62019010 Chenopodium quinoa HOM05D001755 ORTHO05D001665 2.6e-14 81.3 41 92.7
CARHR278280 Cardamine hirsuta HOM05D001755 ORTHO05D001665 4.4e-14 80.5 54 68.5
Nitab4.5_0001264g0230 Nicotiana tabacum HOM05D001755 ORTHO05D001665 5.7e-14 80.1 92 48.9
VMungo1309G0268 Vigna mungo HOM05D001755 ORTHO05D001665 5.7e-14 80.1 41 90.2
Rhsim06G0074100 Rhododendron simsii HOM05D001755 ORTHO05D001665 7.5e-14 79.7 41 87.8
Aa31sc34G40 Aethionema arabicum HOM05D001755 ORTHO05D001665 9.8e-14 79.3 47 72.3
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 1.3e-13 79.0 41 85.4
COL.COLO4_35196 Corchorus olitorius HOM05D001755 ORTHO05D001665 1.3e-13 79.0 41 85.4
Carub.0006s0803 Capsella rubella HOM05D001755 ORTHO05D001665 2.8e-13 77.8 55 69.1
CARHR203920 Cardamine hirsuta HOM05D001755 ORTHO05D001665 2.8e-13 77.8 55 69.1
Duzib041G0605 Durio zibethinus HOM05D001755 ORTHO05D001665 2.8e-13 77.8 41 82.9
Thhalv10015558m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 2.8e-13 77.8 55 69.1
VMungo0540G1031 Vigna mungo HOM05D001755 ORTHO05D001665 3.7e-13 77.4 41 87.8
BcaC01g06905 Brassica carinata HOM05D001755 ORTHO05D001665 4.9e-13 77.0 51 68.6
C03p61950 Brassica napus HOM05D001755 ORTHO05D001665 4.9e-13 77.0 51 68.6
BolC3t18454H Brassica oleracea HOM05D001755 ORTHO05D001665 4.9e-13 77.0 51 68.6
MELO3C018591.2 Cucumis melo HOM05D001755 ORTHO05D001665 4.9e-13 77.0 41 85.4
Duzib052G1081 Durio zibethinus HOM05D001755 ORTHO05D001665 6.3e-13 76.6 43 76.7
AUR62027851 Chenopodium quinoa HOM05D001755 ORTHO05D001665 1.8e-12 75.1 38 94.7
FAN13G1260 Fragaria x ananassa HOM05D001755 ORTHO05D001665 2.4e-12 74.7 41 80.5
Aqoxy6G01463 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 3.2e-12 74.3 41 80.5
Nitab4.5_0002650g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 5.4e-12 73.6 41 78.0
VMungo0251G2544 Vigna mungo HOM05D001755 ORTHO05D001665 2.7e-11 71.2 41 82.9
Ciclev10003720m.g Citrus clementina HOM05D001755 ORTHO05D001665 3.5e-11 70.9 41 75.6
BraA10t44831Z Brassica rapa HOM05D001755 ORTHO05D001665 4.5e-11 70.5 54 59.3
BcaB08g37202 Brassica carinata HOM05D001755 ORTHO05D001665 5.9e-11 70.1 53 60.4
BolC9t59551H Brassica oleracea HOM05D001755 ORTHO05D001665 5.9e-11 70.1 53 60.4
FAN18G3889 Fragaria x ananassa HOM05D001755 ORTHO05D001665 1.7e-10 68.6 36 80.6
Sabra17G0032400 Salix brachista HOM05D001755 ORTHO05D001665 8.6e-10 66.2 41 75.6
CDE10G0731 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 3.6e-08 60.8 43 65.1
Aa31LG3G17530 Aethionema arabicum HOM05D001755 ORTHO05D001665 1.0e-07 59.3 41 63.4
BcaB07g29738 Brassica carinata HOM05D001755 ORTHO05D001665 1.4e-07 58.9 41 63.4
unitig_62.g23628 Utricularia gibba HOM05D001755 ORTHO05D001665 4.0e-07 57.4 41 58.5


User provided reference genes

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