Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 3.7e-154 548.1 269 100.0
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 7.6e-83 311.2 241 65.6
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.9e-82 309.3 255 61.6
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 2.9e-82 309.3 236 63.1
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 7.1e-81 304.7 239 64.0
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 4.6e-80 302.0 252 62.7
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 1.8e-79 300.1 233 62.7
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 5.1e-79 298.5 239 62.3
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 5.1e-79 298.5 244 61.1
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 5.1e-79 298.5 254 58.3
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 6.7e-79 298.1 234 62.0
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 2.8e-77 292.7 243 58.8
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 2.8e-77 292.7 235 59.1
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 1.1e-76 290.8 243 57.6
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 9.0e-76 287.7 243 58.0
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 7.6e-75 284.6 252 56.3
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 2.2e-74 283.1 228 61.0
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 3.8e-74 282.3 230 60.0
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 8.5e-74 281.2 248 57.3
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 1.9e-73 280.0 265 55.1
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 2.5e-73 279.6 247 56.3
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 3.6e-72 275.8 233 60.1
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 4.6e-72 275.4 229 58.5
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 6.1e-72 275.0 245 55.1
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 1.0e-71 274.2 230 58.7
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 6.7e-71 271.6 236 54.7
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 8.7e-71 271.2 226 60.2
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.3e-69 267.3 304 49.3
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 2.8e-69 266.2 247 55.9
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 1.5e-67 260.4 239 52.3
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 1.8e-63 246.9 239 55.2
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 2.3e-63 246.5 242 54.5
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 3.9e-63 245.7 231 54.5
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 2.8e-61 239.6 242 54.1
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 1.8e-60 236.9 260 47.3
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 9.1e-60 234.6 241 51.0
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 1.2e-59 234.2 260 46.9
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 2.2e-58 229.9 236 51.7
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 6.5e-58 228.4 255 48.2
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 1.4e-57 227.3 259 49.0
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 9.4e-57 224.6 256 48.4
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 1.2e-56 224.2 231 50.2
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 3.6e-56 222.6 240 49.6
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 4.7e-56 222.2 234 51.3
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 4.7e-56 222.2 247 49.0
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 7.9e-56 221.5 246 47.2
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 2.3e-55 219.9 239 49.4
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 6.7e-55 218.4 238 49.6
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 3.3e-54 216.1 244 50.0
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 2.8e-53 213.0 237 50.6
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 1.4e-52 210.7 231 48.9
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 4.1e-52 209.1 231 48.5
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 4.1e-52 209.1 234 47.9
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 4.1e-52 209.1 239 45.2
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 1.6e-51 207.2 242 50.0
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 4.5e-51 205.7 234 48.7
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 4.5e-51 205.7 250 46.0
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 5.9e-51 205.3 239 47.7
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 5.0e-50 202.2 234 48.3
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 2.5e-49 199.9 245 45.3
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 5.5e-49 198.7 237 46.8
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 1.2e-48 197.6 247 44.5
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 2.1e-48 196.8 272 43.0
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 2.7e-48 196.4 245 44.9
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 2.7e-48 196.4 262 43.9
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 4.7e-48 195.7 248 43.5
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 4.7e-48 195.7 259 42.9
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 6.1e-48 195.3 243 44.0
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 8.0e-48 194.9 250 43.2
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 1.0e-47 194.5 247 43.7
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 1.4e-47 194.1 243 43.6
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 1.4e-47 194.1 235 46.8
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 3.0e-47 193.0 242 45.0
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 3.0e-47 193.0 235 47.2
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 4.0e-47 192.6 249 44.2
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 4.0e-47 192.6 249 44.2
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 6.7e-47 191.8 245 44.5
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 1.2e-46 191.0 243 43.6
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 1.5e-46 190.7 234 45.3
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 4.4e-46 189.1 255 41.6
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 9.7e-46 188.0 298 39.6
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 1.3e-45 187.6 243 42.8
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 4.5e-43 179.1 233 42.9
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 7.7e-43 178.3 241 43.6
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 2.2e-42 176.8 301 35.2
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 2.9e-42 176.4 241 43.2
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 1.5e-41 174.1 175 53.1
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 4.2e-41 172.6 172 53.5
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.0e-38 163.7 143 60.8
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.3e-37 161.0 143 60.1
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 2.2e-37 160.2 329 33.4
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 1.4e-36 157.5 255 38.8
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 5.4e-36 155.6 205 47.3
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 7.0e-36 155.2 260 40.0
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 6.8e-31 138.7 125 55.2
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 3.4e-30 136.3 144 50.7
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.5e-25 120.9 138 44.9
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 3.3e-25 119.8 170 44.7
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 2.1e-24 117.1 104 56.7
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 5.7e-22 109.0 90 60.0
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.0e-19 100.5 143 44.1
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 7.8e-19 98.6 189 34.4
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.4e-12 77.0 139 35.3
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 1.6e-11 74.3 249 26.9
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.3e-10 71.2 276 25.0
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 3.3e-09 66.6 257 24.5
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 9.5e-09 65.1 268 23.1
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.5e-06 57.8 276 21.7
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 2.6e-06 57.0 52 59.6


User provided reference genes

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