Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.9e-28 127.5 67 100.0
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.6e-18 95.5 65 80.0
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 6.2e-18 93.6 67 73.1
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.2e-16 89.4 64 68.8
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.2e-16 89.4 64 68.8
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 2.0e-16 88.6 66 68.2
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 3.4e-16 87.8 66 66.7
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.5e-16 87.4 66 69.7
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.5e-16 87.4 66 69.7
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 7.6e-16 86.7 64 65.6
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.9e-16 86.3 63 68.3
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.9e-16 86.3 63 68.3
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.9e-16 86.3 66 65.2
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 9.9e-16 86.3 62 67.7
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.3e-15 85.9 67 62.7
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.3e-15 85.9 67 62.7
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.7e-15 85.5 67 64.2
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 1.7e-15 85.5 64 64.1
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.7e-15 85.5 67 64.2
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 2.2e-15 85.1 67 65.7
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 3.8e-15 84.3 66 66.7
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.8e-15 84.3 67 62.7
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.8e-15 84.3 66 65.2
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 6.4e-15 83.6 67 64.2
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 6.4e-15 83.6 67 64.2
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 6.4e-15 83.6 64 65.6
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 8.4e-15 83.2 67 62.7
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.4e-14 82.4 63 66.7
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.4e-14 82.4 63 66.7
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 3.2e-14 81.3 67 68.7
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 4.2e-14 80.9 66 63.6
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.2e-14 80.9 67 59.7
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 4.2e-14 80.9 67 61.2
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 9.3e-14 79.7 67 61.2
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.2e-13 79.3 67 61.2
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.2e-13 79.3 67 61.2
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.7e-13 78.2 62 64.5
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.7e-13 78.2 62 64.5
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.7e-13 78.2 66 59.1
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 4.6e-13 77.4 66 62.1
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 4.6e-13 77.4 66 62.1
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.0e-13 77.0 62 62.9
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.0e-13 77.0 65 60.0
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 6.0e-13 77.0 62 62.9
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 6.0e-13 77.0 66 56.1
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 7.9e-13 76.6 63 61.9
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.0e-12 76.3 62 62.9
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.8e-12 75.5 61 57.4
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 1.8e-12 75.5 63 57.1
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.8e-12 75.5 62 61.3
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 2.3e-12 75.1 62 61.3
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.0e-12 74.7 62 59.7
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.7e-12 73.6 61 54.1
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 8.7e-12 73.2 62 59.7
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 8.7e-12 73.2 62 59.7
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 1.1e-11 72.8 62 58.1
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.1e-11 72.8 62 61.3
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 1.1e-11 72.8 62 58.1
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.1e-11 72.8 62 58.1
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 1.5e-11 72.4 63 58.7
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.9e-11 72.0 66 54.5
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 1.9e-11 72.0 62 61.3
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.5e-11 71.6 62 58.1
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 4.3e-11 70.9 62 58.1
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 4.3e-11 70.9 62 58.1
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.3e-11 70.9 62 58.1
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 5.6e-11 70.5 62 59.7
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.6e-11 70.5 62 58.1
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 5.6e-11 70.5 67 58.2
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 5.6e-11 70.5 62 56.5
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 7.4e-11 70.1 62 56.5
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 7.4e-11 70.1 66 54.5
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 7.4e-11 70.1 62 51.6
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 7.4e-11 70.1 50 66.0
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 7.4e-11 70.1 62 56.5
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 7.4e-11 70.1 62 59.7
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.3e-10 69.3 62 56.5
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.3e-10 69.3 59 54.2
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.3e-10 69.3 59 54.2
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 2.1e-10 68.6 62 56.5
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 2.1e-10 68.6 62 56.5
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 2.1e-10 68.6 64 51.6
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.1e-10 68.6 62 58.1
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 2.1e-10 68.6 62 54.8
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.1e-10 68.6 62 54.8
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 2.8e-10 68.2 64 50.0
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 2.8e-10 68.2 64 50.0
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.8e-10 68.2 62 58.1
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.8e-10 68.2 62 54.8
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 3.7e-10 67.8 62 54.8
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 3.7e-10 67.8 62 56.5
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.7e-10 67.8 54 59.3
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.7e-10 67.8 54 59.3
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 4.8e-10 67.4 66 54.5
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 6.2e-10 67.0 56 58.9
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 8.2e-10 66.6 63 55.6
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 8.2e-10 66.6 64 50.0
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 8.2e-10 66.6 62 51.6
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 8.2e-10 66.6 62 56.5
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 8.2e-10 66.6 62 56.5
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 1.1e-09 66.2 62 54.8
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-09 65.9 62 53.2
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 1.4e-09 65.9 63 55.6
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.4e-09 65.9 62 53.2
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.4e-09 65.9 62 53.2
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.4e-09 65.9 56 60.7
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.8e-09 65.5 56 57.1
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 1.8e-09 65.5 67 53.7
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.8e-09 65.5 63 55.6
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 2.4e-09 65.1 63 55.6
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 3.1e-09 64.7 66 53.0
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 3.1e-09 64.7 63 55.6
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 3.1e-09 64.7 63 55.6
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.1e-09 64.7 64 45.3
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 4.0e-09 64.3 64 50.0
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 4.0e-09 64.3 63 55.6
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 5.3e-09 63.9 63 54.0
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 5.3e-09 63.9 62 50.0
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 5.3e-09 63.9 62 54.8
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 6.9e-09 63.5 62 51.6
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 9.0e-09 63.2 61 54.1
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.2e-08 62.8 60 58.3
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 1.2e-08 62.8 62 51.6
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.5e-08 62.4 62 53.2
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.5e-08 62.4 62 53.2
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.5e-08 62.4 51 58.8
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 2.0e-08 62.0 51 54.9
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.6e-08 61.6 60 58.3
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 3.4e-08 61.2 54 57.4
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.4e-08 61.2 62 51.6
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.4e-08 61.2 59 54.2
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 4.5e-08 60.8 60 53.3
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 1.0e-07 59.7 60 51.7
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 1.0e-07 59.7 60 51.7
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 1.0e-07 59.7 62 50.0
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 1.0e-07 59.7 67 52.2
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 1.3e-07 59.3 62 51.6
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 1.7e-07 58.9 50 54.0
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 2.2e-07 58.5 61 50.8
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 2.9e-07 58.2 44 63.6
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 2.9e-07 58.2 67 50.7
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 3.8e-07 57.8 62 48.4
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 4.9e-07 57.4 64 43.8
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 4.9e-07 57.4 67 50.7
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 6.5e-07 57.0 53 54.7
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 8.4e-07 56.6 63 52.4
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 8.4e-07 56.6 63 52.4
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 8.4e-07 56.6 63 52.4
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.1e-06 56.2 56 51.8
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.4e-06 55.8 66 48.5
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 1.4e-06 55.8 51 54.9
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 1.9e-06 55.5 63 50.8
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 1.9e-06 55.5 63 50.8
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 2.5e-06 55.1 63 49.2
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.2e-06 54.7 54 53.7
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 3.2e-06 54.7 56 53.6
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 5.5e-06 53.9 67 46.3
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 7.1e-06 53.5 59 49.2


User provided reference genes

Program Settings