Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0005160 Simmondsia chinensis HOM05D006205 ORTHO05D007703 3.6e-213 744.6 362 100.0
CSS0013544 Camellia sinensis var. sinensis HOM05D006205 ORTHO05D007703 1.2e-192 676.4 358 89.4
Gorai.002G228500 Gossypium raimondii HOM05D006205 ORTHO05D007703 1.0e-191 673.3 358 87.7
Gohir.A01G194800 Gossypium hirsutum HOM05D006205 ORTHO05D007703 1.3e-191 672.9 358 87.7
Dinv24098 Davidia involucrata HOM05D006205 ORTHO05D007703 2.3e-191 672.2 359 88.3
Haze_19942 Corylus avellana HOM05D006205 ORTHO05D007703 6.7e-191 670.6 357 88.2
Duzib106G0917 Durio zibethinus HOM05D006205 ORTHO05D007703 5.6e-190 667.5 358 87.7
PGR142G1368 Punica granatum HOM05D006205 ORTHO05D007703 7.4e-190 667.2 359 87.5
Gohir.D01G185000 Gossypium hirsutum HOM05D006205 ORTHO05D007703 2.8e-189 665.2 358 86.9
Lju124A32T75 Lonicera japonica HOM05D006205 ORTHO05D007703 4.8e-189 664.5 359 86.9
Actinidia17259 Actinidia chinensis HOM05D006205 ORTHO05D007703 6.2e-189 664.1 359 86.1
CiPaw.09G032800 Carya illinoinensis HOM05D006205 ORTHO05D007703 6.9e-188 660.6 359 86.6
Thecc.05G167100 Theobroma cacao HOM05D006205 ORTHO05D007703 9.0e-188 660.2 358 86.6
Ciclev10031918m.g Citrus clementina HOM05D006205 ORTHO05D007703 1.5e-187 659.4 359 86.9
Duzib093G1988 Durio zibethinus HOM05D006205 ORTHO05D007703 2.6e-187 658.7 358 86.6
Prupe.7G072500 Prunus persica HOM05D006205 ORTHO05D007703 2.6e-187 658.7 359 86.6
Hund19180 Selenicereus undatus HOM05D006205 ORTHO05D007703 2.6e-187 658.7 359 87.5
Hma1.2p1_1575F.1_g291620 Hydrangea macrophylla HOM05D006205 ORTHO05D007703 4.5e-187 657.9 359 85.8
Ca_08497_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 5.8e-187 657.5 359 86.1
Ca_29722_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 5.8e-187 657.5 359 86.1
arahy.Tifrunner.gnm1.ann1.68EW5P Arachis hypogaea HOM05D006205 ORTHO05D007703 8.4e-186 653.7 356 86.0
arahy.Tifrunner.gnm1.ann1.ARGW3J Arachis hypogaea HOM05D006205 ORTHO05D007703 8.4e-186 653.7 356 86.0
TAR623G1003 Trochodendron aralioides HOM05D006205 ORTHO05D007703 8.4e-186 653.7 362 85.4
QL07p022686 Quercus lobata HOM05D006205 ORTHO05D007703 1.1e-185 653.3 359 86.4
MSTRG.26097 Avicennia marina HOM05D006205 ORTHO05D007703 1.4e-185 652.9 359 85.5
Eucgr.K01821 Eucalyptus grandis HOM05D006205 ORTHO05D007703 1.9e-185 652.5 359 85.0
TPR.G4691 Trifolium pratense HOM05D006205 ORTHO05D007703 7.1e-185 650.6 359 85.2
Cpa.g.sc85.111 Carica papaya HOM05D006205 ORTHO05D007703 2.1e-184 649.0 359 86.1
Manes.09G031300 Manihot esculenta HOM05D006205 ORTHO05D007703 2.1e-184 649.0 359 83.6
Nitab4.5_0006846g0010 Nicotiana tabacum HOM05D006205 ORTHO05D007703 4.6e-184 647.9 359 84.7
Glyma.19G144900 Glycine max HOM05D006205 ORTHO05D007703 6.0e-184 647.5 358 85.2
Sabra16G0053600 Salix brachista HOM05D006205 ORTHO05D007703 6.0e-184 647.5 359 83.6
Potri.016G049700 Populus trichocarpa HOM05D006205 ORTHO05D007703 1.3e-183 646.4 359 83.0
THA.LOC104809921 Tarenaya hassleriana HOM05D006205 ORTHO05D007703 1.3e-183 646.4 358 83.8
Sabra06G0041700 Salix brachista HOM05D006205 ORTHO05D007703 3.9e-183 644.8 362 83.4
Psat3g069960 Pisum sativum HOM05D006205 ORTHO05D007703 1.9e-182 642.5 359 84.1
Lsat_1_v5_gn_8_79241 Lactuca sativa HOM05D006205 ORTHO05D007703 2.5e-182 642.1 359 84.1
Nn2g15532 Nelumbo nucifera HOM05D006205 ORTHO05D007703 3.3e-182 641.7 358 84.6
Potri.006G058400 Populus trichocarpa HOM05D006205 ORTHO05D007703 3.3e-182 641.7 362 82.9
vmacro09103 Vaccinium macrocarpon HOM05D006205 ORTHO05D007703 5.7e-182 641.0 368 82.9
Cc06_g16310 Coffea canephora HOM05D006205 ORTHO05D007703 7.4e-182 640.6 359 83.6
EL10Ac3g06974 Beta vulgaris HOM05D006205 ORTHO05D007703 9.6e-182 640.2 362 85.4
CAN.G85.9 Capsicum annuum HOM05D006205 ORTHO05D007703 1.3e-181 639.8 359 83.8
DCAR_013564 Daucus carota HOM05D006205 ORTHO05D007703 1.6e-181 639.4 358 83.2
Phvul.001G139800 Phaseolus vulgaris HOM05D006205 ORTHO05D007703 1.6e-181 639.4 358 83.5
SGA_v2.0_scaffold94G28443 Striga asiatica HOM05D006205 ORTHO05D007703 1.6e-181 639.4 363 84.0
VMungo1383G0076 Vigna mungo HOM05D006205 ORTHO05D007703 2.1e-181 639.0 358 82.7
Lalb_Chr18g0047621 Lupinus albus HOM05D006205 ORTHO05D007703 3.7e-181 638.3 359 83.8
Medtr7g092680 Medicago truncatula HOM05D006205 ORTHO05D007703 4.8e-181 637.9 358 84.6
PGSC0003DMG400012937 Solanum tuberosum HOM05D006205 ORTHO05D007703 1.1e-180 636.7 359 83.8
AUR62024356 Chenopodium quinoa HOM05D006205 ORTHO05D007703 1.4e-180 636.3 358 84.6
RcHm_v2.0_Chr3g0480421 Rosa chinensis HOM05D006205 ORTHO05D007703 1.4e-180 636.3 358 83.5
FvH4_6g22800 Fragaria vesca HOM05D006205 ORTHO05D007703 1.8e-180 636.0 358 83.0
FAN14G5729 Fragaria x ananassa HOM05D006205 ORTHO05D007703 1.8e-180 636.0 358 83.0
FAN02G0014 Fragaria x ananassa HOM05D006205 ORTHO05D007703 2.4e-180 635.6 358 83.0
CANSAT64G2514 Cannabis sativa HOM05D006205 ORTHO05D007703 4.5e-179 631.3 362 83.4
FAN05G5560 Fragaria x ananassa HOM05D006205 ORTHO05D007703 2.2e-178 629.0 358 82.4
Lj1g0022121 Lotus japonicus HOM05D006205 ORTHO05D007703 6.5e-178 627.5 397 76.8
Solyc03g064030.3 Solanum lycopersicum HOM05D006205 ORTHO05D007703 6.5e-178 627.5 359 82.7
QL93p2022_0017 Quercus lobata HOM05D006205 ORTHO05D007703 1.1e-177 626.7 417 74.3
Migut.K00057 Erythranthe guttata HOM05D006205 ORTHO05D007703 1.4e-177 626.3 358 81.8
Sed0025317 Sechium edule HOM05D006205 ORTHO05D007703 1.4e-177 626.3 358 82.7
Sopen03g017680 Solanum pennellii HOM05D006205 ORTHO05D007703 1.4e-177 626.3 359 82.7
HanXRQChr05g0132791 Helianthus annuus HOM05D006205 ORTHO05D007703 1.9e-177 625.9 360 82.2
MELO3C009648.2 Cucumis melo HOM05D006205 ORTHO05D007703 2.5e-177 625.5 385 78.2
TWI74G1063 Tripterygium wilfordii HOM05D006205 ORTHO05D007703 3.2e-177 625.2 339 86.4
Aqoxy1G00212 Aquilegia oxysepala HOM05D006205 ORTHO05D007703 5.1e-175 617.8 359 80.5
Carub.0003s1152 Capsella rubella HOM05D006205 ORTHO05D007703 6.7e-175 617.5 359 79.9
Sp3g10390 Schrenkiella parvula HOM05D006205 ORTHO05D007703 8.7e-175 617.1 359 79.9
ClCG10G017350 Citrullus lanatus HOM05D006205 ORTHO05D007703 1.3e-173 613.2 425 72.0
PSO384G4504 Papaver somniferum HOM05D006205 ORTHO05D007703 2.2e-173 612.5 357 79.3
AL3G23830 Arabidopsis lyrata HOM05D006205 ORTHO05D007703 2.8e-173 612.1 359 78.6
AUR62025960 Chenopodium quinoa HOM05D006205 ORTHO05D007703 3.7e-173 611.7 358 81.8
AT3G12150 Arabidopsis thaliana HOM05D006205 ORTHO05D007703 4.8e-173 611.3 359 78.6
SalBow1G2518 Salvia bowleyana HOM05D006205 ORTHO05D007703 6.3e-173 610.9 401 74.3
ATR0605G163 Amborella trichopoda HOM05D006205 ORTHO05D007703 2.4e-172 609.0 353 80.7
Thhalv10021002m.g Eutrema salsugineum HOM05D006205 ORTHO05D007703 2.4e-172 609.0 359 78.8
Aa31LG3G6360 Aethionema arabicum HOM05D006205 ORTHO05D007703 5.3e-172 607.8 387 74.4
A05p37150 Brassica napus HOM05D006205 ORTHO05D007703 9.0e-172 607.1 359 78.3
C05p55580 Brassica napus HOM05D006205 ORTHO05D007703 9.0e-172 607.1 359 78.3
BolC5t34227H Brassica oleracea HOM05D006205 ORTHO05D007703 9.0e-172 607.1 359 78.3
BcaC05g29277 Brassica carinata HOM05D006205 ORTHO05D007703 1.2e-171 606.7 359 78.0
PSO339G0108 Papaver somniferum HOM05D006205 ORTHO05D007703 3.4e-171 605.1 358 78.2
BraA05t22513Z Brassica rapa HOM05D006205 ORTHO05D007703 1.7e-170 602.8 359 77.4
CDE10G0043 Ceratophyllum demersum HOM05D006205 ORTHO05D007703 1.9e-169 599.4 356 79.5
Zm00001eb236370 Zea mays HOM05D006205 ORTHO05D007703 2.5e-169 599.0 366 76.0
Os02g0195000 Oryza sativa ssp. japonica HOM05D006205 ORTHO05D007703 2.3e-167 592.4 366 74.6
BraA03t12906Z Brassica rapa HOM05D006205 ORTHO05D007703 3.9e-167 591.7 359 76.9
A03p37470 Brassica napus HOM05D006205 ORTHO05D007703 1.5e-166 589.7 359 76.6
BcaC01g04062 Brassica carinata HOM05D006205 ORTHO05D007703 2.0e-166 589.3 359 76.6
C03p45470 Brassica napus HOM05D006205 ORTHO05D007703 9.7e-166 587.0 359 76.3
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 2.8e-165 585.5 359 76.0
unitig_899.g15081 Utricularia gibba HOM05D006205 ORTHO05D007703 3.1e-164 582.0 357 78.7
GSVIVG01033369001 Vitis vinifera HOM05D006205 ORTHO05D007703 5.9e-163 577.8 314 87.6
SEGI_33856 Sequoiadendron giganteum HOM05D006205 ORTHO05D007703 1.0e-162 577.0 357 76.2
Cfa016888 Carpinus fangiana HOM05D006205 ORTHO05D007703 3.9e-159 565.1 302 88.4
Nitab4.5_0000016g0140 Nicotiana tabacum HOM05D006205 ORTHO05D007703 4.5e-155 551.6 359 74.9
ECA236G0538 Erigeron canadensis HOM05D006205 ORTHO05D007703 1.6e-152 543.1 314 83.8
MD12G1062300 Malus domestica HOM05D006205 ORTHO05D007703 1.8e-151 539.7 306 83.7
BcaB04g18694 Brassica carinata HOM05D006205 ORTHO05D007703 2.3e-151 539.3 336 74.7
Rhsim04G0098500 Rhododendron simsii HOM05D006205 ORTHO05D007703 1.9e-145 519.6 403 65.0
Mapoly0096s0035 Marchantia polymorpha HOM05D006205 ORTHO05D007703 6.1e-144 514.6 358 67.6
Ah.13g076130 Amaranthus hybridus HOM05D006205 ORTHO05D007703 3.0e-143 512.3 350 74.3
SMO334G0020 Selaginella moellendorffii HOM05D006205 ORTHO05D007703 2.0e-142 509.6 357 68.9
AagrBONN_evm.TU.Sc2ySwM_228.3151 Anthoceros agrestis HOM05D006205 ORTHO05D007703 7.0e-140 501.1 358 67.6
Pp3c3_27370 Physcomitrium patens HOM05D006205 ORTHO05D007703 5.9e-139 498.0 357 65.5
CBR_g25855 Chara braunii HOM05D006205 ORTHO05D007703 1.4e-127 460.3 368 62.8
CsaV3_3G039050 Cucumis sativus L. HOM05D006205 ORTHO05D007703 1.2e-126 457.2 251 86.9
Peaxi162Scf00285g00443 Petunia axillaris HOM05D006205 ORTHO05D007703 5.7e-126 454.9 359 65.7
SalBow1G2557 Salvia bowleyana HOM05D006205 ORTHO05D007703 8.3e-125 451.1 365 63.8
COL.COLO4_36119 Corchorus olitorius HOM05D006205 ORTHO05D007703 1.2e-123 447.2 241 89.2
HPP92_023778 Vanilla planifolia HOM05D006205 ORTHO05D007703 3.6e-112 409.1 239 82.8
Dinv18116 Davidia involucrata HOM05D006205 ORTHO05D007703 8.3e-109 397.9 211 86.7
CARHR086730 Cardamine hirsuta HOM05D006205 ORTHO05D007703 2.5e-97 359.8 205 82.9
Glyma.02G176500 Glycine max HOM05D006205 ORTHO05D007703 3.0e-74 283.1 180 77.8
MBI04_g47239_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 4.6e-67 259.2 152 75.7
MBI04_g14269_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 1.4e-60 237.7 154 72.1
Actinidia33641 Actinidia chinensis HOM05D006205 ORTHO05D007703 4.8e-56 222.6 119 80.7
MD14G1062900 Malus domestica HOM05D006205 ORTHO05D007703 5.3e-55 219.2 126 77.8
Cre02.g076150 Chlamydomonas reinhardtii HOM05D006205 ORTHO05D007703 1.5e-46 191.0 322 37.6
MD14G1062700 Malus domestica HOM05D006205 ORTHO05D007703 1.9e-44 184.1 205 51.2
VMungo1080G0431 Vigna mungo HOM05D006205 ORTHO05D007703 2.2e-37 160.6 98 78.6
arahy.Tifrunner.gnm1.ann1.EV0IJD Arachis hypogaea HOM05D006205 ORTHO05D007703 2.6e-33 147.1 86 82.6
MD12G1062200 Malus domestica HOM05D006205 ORTHO05D007703 3.1e-23 113.6 57 87.7
VMungo0331G0486 Vigna mungo HOM05D006205 ORTHO05D007703 5.0e-21 106.3 108 54.6
Medtr0001s0010 Medicago truncatula HOM05D006205 ORTHO05D007703 1.0e-18 98.6 79 64.6
Glyma.02G176400 Glycine max HOM05D006205 ORTHO05D007703 5.4e-15 86.3 57 68.4
Rhsim04G0098400 Rhododendron simsii HOM05D000259 ORTHO05D000155 5.9e-14 82.8 37 94.6
BcaC01g04094 Brassica carinata HOM05D001227 ORTHO05D001082 1.1e-12 78.6 162 36.4
MCO07G325 Micromonas commoda HOM05D006205 ORTHO05D007703 1.5e-09 68.2 247 27.1


User provided reference genes

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