Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 8.5e-103 377.5 264 100.0
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 1.6e-64 250.4 263 65.0
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 2.0e-64 250.0 244 61.5
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.5e-64 249.2 244 61.9
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 3.5e-64 249.2 246 63.4
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 4.6e-64 248.8 246 62.6
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 1.3e-63 247.3 246 63.0
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.7e-63 246.9 245 62.0
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 1.7e-63 246.9 247 62.8
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 3.9e-63 245.7 246 61.4
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 5.0e-63 245.4 245 62.0
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 8.6e-63 244.6 247 58.7
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.9e-62 243.4 244 59.4
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.5e-62 243.0 245 55.1
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 3.3e-62 242.7 250 62.4
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 4.3e-62 242.3 246 66.3
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 4.3e-62 242.3 244 61.9
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 9.5e-62 241.1 248 57.3
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.2e-61 240.7 245 60.8
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 1.6e-61 240.4 247 58.3
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 2.1e-61 240.0 244 63.1
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 2.1e-61 240.0 246 57.7
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 3.6e-61 239.2 250 61.6
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 3.6e-61 239.2 246 65.4
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 1.4e-60 237.3 247 61.5
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 1.4e-60 237.3 266 51.5
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 1.4e-60 237.3 244 60.2
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 1.4e-60 237.3 268 56.7
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 2.3e-60 236.5 246 58.9
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 3.1e-60 236.1 267 57.7
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 3.1e-60 236.1 245 66.9
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 6.8e-60 235.0 244 59.4
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 6.8e-60 235.0 250 60.0
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 8.9e-60 234.6 246 60.6
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 8.9e-60 234.6 247 57.1
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 1.2e-59 234.2 247 56.7
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 2.0e-59 233.4 248 52.4
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 1.3e-58 230.7 248 59.3
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 1.7e-58 230.3 250 59.2
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 2.9e-58 229.6 245 58.0
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 3.7e-58 229.2 246 58.1
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.9e-58 228.8 244 58.2
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 6.4e-58 228.4 253 60.9
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 6.4e-58 228.4 245 56.3
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 6.4e-58 228.4 247 59.5
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 6.4e-58 228.4 250 55.2
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 6.4e-58 228.4 248 58.5
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 8.3e-58 228.0 247 59.5
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.9e-57 226.9 244 55.3
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 9.2e-57 224.6 275 51.3
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 1.2e-56 224.2 247 58.7
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 1.2e-56 224.2 246 56.1
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 2.1e-56 223.4 249 58.2
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 2.1e-56 223.4 247 58.3
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 3.5e-56 222.6 244 57.8
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 3.5e-56 222.6 248 61.7
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 3.5e-56 222.6 244 66.0
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 4.6e-56 222.2 249 57.8
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 4.6e-56 222.2 248 53.6
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 1.3e-55 220.7 249 57.0
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 2.3e-55 219.9 247 58.3
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 2.3e-55 219.9 244 57.4
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 2.3e-55 219.9 248 57.3
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.9e-55 219.2 245 57.1
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 5.1e-55 218.8 248 58.9
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 6.6e-55 218.4 248 56.9
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 6.6e-55 218.4 248 56.9
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 6.6e-55 218.4 244 54.9
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 1.2e-53 214.2 241 63.1
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 2.8e-53 213.0 247 54.7
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 3.6e-53 212.6 244 55.7
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 5.2e-52 208.8 264 54.5
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 8.9e-52 208.0 248 56.5
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 1.5e-51 207.2 246 54.1
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 2.0e-51 206.8 244 58.6
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 7.6e-51 204.9 253 53.8
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.3e-50 204.1 246 53.7
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 3.7e-50 202.6 248 54.0
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 3.2e-49 199.5 245 52.2
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 4.1e-49 199.1 244 53.7
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.2e-48 197.6 210 55.2
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 1.2e-48 197.6 247 65.2
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 4.6e-48 195.7 221 58.4
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 5.1e-47 192.2 266 51.1
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 3.3e-46 189.5 246 53.7
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 6.2e-45 185.3 244 52.5
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 2.4e-44 183.3 229 53.7
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 2.4e-44 183.3 221 55.7
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 5.2e-44 182.2 225 49.3
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 1.5e-43 180.6 204 53.9
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 4.4e-43 179.1 239 49.4
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 9.9e-43 177.9 266 44.0
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 2.1e-40 170.2 181 55.8
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 3.5e-40 169.5 244 51.2
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 2.5e-38 163.3 181 55.8
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 5.6e-38 162.2 254 46.1
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 2.1e-37 160.2 250 47.6
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 3.4e-35 152.9 204 53.9
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 4.5e-35 152.5 254 39.0
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 2.4e-33 146.7 180 46.7
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 7.1e-33 145.2 155 54.8
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 1.5e-30 137.5 257 35.0
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.0e-27 127.1 151 46.4
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 2.6e-27 126.7 113 61.1
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 1.4e-25 120.9 269 38.7
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.4e-25 120.2 162 51.2
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 2.8e-21 106.7 92 60.9
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 8.1e-21 105.1 247 35.2
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 4.0e-20 102.8 220 37.3
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 1.6e-16 90.9 245 35.5
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 2.7e-16 90.1 159 37.1
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.3e-15 87.8 99 48.5
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.3e-15 87.8 99 48.5
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 6.7e-15 85.5 85 55.3
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 6.7e-15 85.5 117 47.0
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 5.7e-14 82.4 45 77.8
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 5.9e-11 72.4 326 22.4
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 3.2e-09 66.6 57 57.9


User provided reference genes

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