Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 1.6e-68 262.7 140 100.0
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 1.9e-48 196.1 147 73.5
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 2.1e-47 192.6 148 69.6
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 9.6e-45 183.7 140 72.1
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 2.8e-44 182.2 147 66.0
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 3.1e-43 178.7 148 64.9
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 5.2e-43 177.9 142 66.9
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 5.2e-43 177.9 144 68.1
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 1.5e-42 176.4 147 65.3
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 4.4e-42 174.9 134 66.4
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 5.8e-42 174.5 143 63.6
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 9.9e-42 173.7 150 64.0
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 9.9e-42 173.7 146 65.1
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 1.7e-41 172.9 148 64.9
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 2.9e-41 172.2 144 68.1
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 3.8e-41 171.8 148 63.5
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 4.9e-41 171.4 148 63.5
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 6.4e-41 171.0 147 63.9
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 8.4e-41 170.6 147 63.3
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 8.4e-41 170.6 136 65.4
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 8.4e-41 170.6 147 61.2
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 1.1e-40 170.2 147 62.6
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 1.1e-40 170.2 148 62.2
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.4e-40 169.9 148 62.8
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 9.3e-40 167.2 142 66.9
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 1.2e-39 166.8 147 61.9
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 2.1e-39 166.0 144 64.6
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 4.6e-39 164.9 144 63.9
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 7.8e-39 164.1 144 62.5
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 7.8e-39 164.1 147 59.2
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 1.3e-38 163.3 147 60.5
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 2.3e-38 162.5 147 63.3
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 3.0e-38 162.2 170 57.1
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 3.9e-38 161.8 138 63.0
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 5.1e-38 161.4 144 61.8
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 5.1e-38 161.4 147 58.5
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 6.6e-38 161.0 144 61.1
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 6.6e-38 161.0 144 61.8
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 6.6e-38 161.0 144 63.2
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 3.3e-37 158.7 146 60.3
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 7.3e-37 157.5 144 60.4
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 7.3e-37 157.5 144 60.4
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 1.6e-36 156.4 150 58.0
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.6e-36 156.4 144 60.4
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 3.6e-36 155.2 137 62.8
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 6.2e-36 154.5 140 57.1
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 1.1e-35 153.7 136 61.8
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 1.1e-35 153.7 140 60.7
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 2.4e-35 152.5 173 53.2
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 2.4e-35 152.5 148 58.1
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 3.1e-35 152.1 173 53.8
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 4.0e-35 151.8 147 56.5
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 4.0e-35 151.8 143 57.3
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 6.9e-35 151.0 140 55.7
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 2.0e-34 149.4 134 59.7
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 2.0e-34 149.4 144 56.9
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 2.6e-34 149.1 147 55.8
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 2.6e-34 149.1 144 56.9
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 3.4e-34 148.7 131 61.8
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 1.7e-33 146.4 138 58.0
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 3.8e-33 145.2 138 59.4
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 4.9e-33 144.8 144 57.6
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 8.4e-33 144.1 132 61.4
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.1e-32 143.7 117 68.4
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.1e-32 143.7 122 67.2
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.9e-32 142.9 121 66.9
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 4.2e-32 141.7 143 55.9
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 4.2e-32 141.7 94 78.7
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 5.4e-32 141.4 139 56.1
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 3.5e-31 138.7 139 55.4
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 3.5e-31 138.7 96 74.0
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 4.6e-31 138.3 146 53.4
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 6.0e-31 137.9 142 57.0
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 7.9e-31 137.5 149 51.7
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 1.8e-30 136.3 140 56.4
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 6.7e-30 134.4 147 51.7
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 8.7e-30 134.0 137 56.9
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 1.1e-29 133.7 93 75.3
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 1.5e-29 133.3 147 55.1
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 1.9e-29 132.9 141 54.6
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 3.3e-29 132.1 121 58.7
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 3.6e-28 128.6 150 50.0
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 3.6e-28 128.6 123 56.9
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 1.4e-27 126.7 123 56.9
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 3.1e-27 125.6 95 68.4
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 2.0e-26 122.9 149 52.3
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 2.6e-26 122.5 130 53.1
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 4.5e-26 121.7 98 65.3
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 4.5e-26 121.7 115 58.3
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 1.3e-25 120.2 121 52.9
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 2.9e-25 119.0 80 76.2
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 4.9e-25 118.2 121 52.9
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 4.9e-25 118.2 93 66.7
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 4.9e-25 118.2 95 64.2
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 6.4e-25 117.9 90 64.4
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 1.1e-24 117.1 81 74.1
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 9.3e-24 114.0 95 64.2
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 4.6e-23 111.7 109 56.9
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 1.0e-22 110.5 139 50.4
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 1.0e-22 110.5 139 50.4
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 2.3e-22 109.4 138 49.3
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 2.3e-22 109.4 125 53.6
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 3.9e-22 108.6 139 48.9
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 6.7e-22 107.8 139 48.2
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 2.5e-21 105.9 134 50.0
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 2.1e-20 102.8 162 41.4
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 2.1e-20 102.8 152 42.8
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 3.7e-20 102.1 124 48.4
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 1.1e-19 100.5 123 50.4
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 2.0e-18 96.3 90 65.6
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 1.7e-17 93.2 124 47.6
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 1.1e-16 90.5 72 63.9
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 3.2e-16 89.0 90 58.9
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 3.2e-16 89.0 91 58.2
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 2.3e-14 82.8 141 41.1
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 1.9e-13 79.7 97 52.6
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 2.5e-13 79.3 89 50.6
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 4.8e-12 75.1 142 40.1
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 6.3e-12 74.7 78 56.4
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 8.2e-12 74.3 92 52.2
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 1.4e-11 73.6 144 41.7
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 1.8e-11 73.2 86 52.3
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 3.8e-09 65.5 60 60.0
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.8e-09 65.5 143 32.9
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 8.5e-09 64.3 60 65.0
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 1.9e-08 63.2 133 32.3
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 1.6e-07 60.1 138 29.7
Nitab4.5_0001041g0050 Nicotiana tabacum HOM05D006603 ORTHO05D007786 2.3e-06 56.2 34 79.4
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.9e-06 55.5 141 31.9
SEGI_34793 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 3.9e-06 55.5 67 46.3
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 5.1e-06 55.1 140 29.3


User provided reference genes

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