Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1648.3 822 100.0
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1179.9 801 74.0
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1152.9 870 69.0
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 0.0e+00 1119.8 847 68.1
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1113.6 858 67.1
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1105.1 871 65.2
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1103.2 918 62.5
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1101.7 829 67.8
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1100.1 873 64.9
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1098.6 880 64.9
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1098.2 867 66.0
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1095.5 856 66.6
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1092.8 856 66.4
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1091.6 870 65.1
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1090.5 879 64.3
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1090.1 871 64.8
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1085.1 873 64.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1083.2 877 64.8
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1082.0 854 65.5
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1079.7 872 64.8
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1078.5 879 65.0
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1077.0 848 66.0
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1076.6 845 66.4
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1075.1 873 64.5
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 5.6e-312 1073.9 886 63.0
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 5.6e-312 1073.9 886 63.0
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 1.1e-311 1073.2 873 64.5
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.1e-311 1072.8 873 64.4
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 1.7e-311 1072.4 870 64.7
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 2.8e-311 1071.6 858 65.9
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 2.8e-311 1071.6 906 63.4
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 3.9e-311 1071.2 882 64.2
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 1.5e-310 1069.3 867 64.5
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 3.3e-310 1068.1 873 64.3
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 8.0e-309 1063.5 865 64.2
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 1.2e-307 1059.7 860 62.9
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 2.6e-307 1058.5 824 66.5
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 3.4e-307 1058.1 873 63.1
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 7.5e-307 1057.0 824 66.3
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 1.3e-306 1056.2 865 64.0
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 2.2e-306 1055.4 861 64.1
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 2.9e-306 1055.0 852 65.1
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 6.4e-306 1053.9 797 68.3
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 4.1e-305 1051.2 839 64.8
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 1.3e-303 1046.2 852 64.8
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 6.6e-303 1043.9 824 65.7
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 4.3e-302 1041.2 877 62.3
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 1.8e-300 1035.8 866 63.3
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 1.5e-299 1032.7 866 63.5
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 9.8e-299 1030.0 844 63.6
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 2.2e-298 1028.9 873 62.4
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 1.9e-297 1025.8 872 62.2
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 4.1e-297 1024.6 815 65.3
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 1.2e-296 1023.1 871 61.9
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 3.5e-296 1021.5 838 64.0
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 4.6e-296 1021.1 892 61.4
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 4.6e-296 1021.1 857 63.1
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 1.3e-295 1019.6 867 62.6
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 3.9e-295 1018.1 856 62.5
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 2.5e-294 1015.4 1010 56.5
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 1.6e-293 1012.7 870 62.1
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 2.1e-293 1012.3 861 62.3
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 3.4e-291 1005.0 817 64.7
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 3.4e-291 1005.0 728 69.5
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 5.8e-291 1004.2 851 61.6
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 6.4e-290 1000.7 812 64.4
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 3.5e-288 995.0 840 62.5
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 2.2e-282 975.7 797 64.1
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 8.4e-282 973.8 808 62.9
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 5.4e-281 971.1 862 61.1
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 2.7e-280 968.8 872 60.1
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 2.7e-280 968.8 853 61.1
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 7.8e-280 967.2 931 57.4
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 7.3e-278 960.7 817 62.7
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.4e-276 955.7 943 56.0
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 3.2e-273 945.3 790 62.9
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 7.1e-273 944.1 820 61.3
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 2.1e-272 942.6 808 61.1
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 2.3e-271 939.1 820 61.1
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 5.1e-271 937.9 812 61.2
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 1.9e-270 936.0 828 60.6
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 2.5e-270 935.6 813 61.1
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 9.6e-270 933.7 812 61.0
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.1e-268 930.2 806 61.4
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.1e-268 930.2 806 61.4
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 1.4e-268 929.9 805 61.2
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 1.3e-266 923.3 831 59.0
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 8.4e-266 920.6 790 61.8
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 3.0e-263 912.1 789 60.8
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 4.8e-261 904.8 836 58.5
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 2.6e-259 899.0 789 60.6
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 9.9e-259 897.1 849 57.7
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.6e-240 835.5 825 55.4
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 3.6e-232 808.9 733 59.5
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 7.7e-219 764.6 735 58.2
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 2.8e-197 693.0 703 54.6
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.9e-189 665.6 891 45.8
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.1e-188 664.5 915 44.6
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 3.4e-182 642.9 488 66.6
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 2.3e-175 620.2 871 44.2
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.3e-162 577.8 401 73.6
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.0e-162 576.6 829 42.9
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 9.0e-159 565.1 398 71.1
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 4.3e-153 546.2 471 60.7
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 6.4e-149 532.3 371 73.6
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 2.3e-146 523.9 548 53.5
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.3e-128 464.9 481 54.1
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 4.8e-128 463.0 418 59.3
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.7e-122 442.6 374 63.4
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.5e-92 345.1 233 72.5
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 3.6e-91 340.5 244 67.2
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 5.5e-84 316.6 173 84.4
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.6e-81 307.8 792 32.4
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 9.5e-76 289.3 373 47.2
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.1e-75 286.6 151 88.7
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 7.5e-73 279.6 283 54.4
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.6e-70 270.4 546 36.3
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.6e-70 270.4 546 36.3
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.3e-64 252.3 145 84.8
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.7e-64 251.9 137 86.1
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.7e-64 250.8 203 65.0
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.6e-59 235.3 137 78.8
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.5e-54 217.6 424 32.8
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.3e-52 210.7 117 79.5
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 4.0e-50 204.1 775 26.2
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 4.8e-35 154.1 186 53.2
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 1.1e-28 132.9 270 31.9
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 8.1e-27 126.7 129 51.2
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.7e-24 119.0 154 40.9
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 4.9e-24 117.5 85 69.4
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 2.6e-17 95.1 129 41.9
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 3.8e-16 91.3 58 67.2
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 6.1e-14 84.0 217 26.3
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-13 82.0 56 75.0
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-13 81.6 56 75.0
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 2.5e-12 78.6 115 40.9
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 3.3e-12 78.2 60 63.3
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 2.2e-11 75.5 57 64.9
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 3.1e-10 71.6 33 90.9
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 7.2e-07 60.5 43 62.8
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 4.6e-06 57.8 37 64.9


User provided reference genes

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