Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 2.5e-141 505.4 245 100.0
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 1.1e-83 313.9 248 61.3
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.4e-80 303.5 248 59.3
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 5.5e-80 301.6 241 61.8
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 1.2e-79 300.4 249 60.6
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 2.7e-79 299.3 232 62.1
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 5.2e-78 295.0 238 60.5
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 2.0e-77 293.1 245 61.2
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 3.3e-77 292.4 254 57.1
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.4e-75 286.2 240 60.8
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 5.3e-75 285.0 241 60.6
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 7.0e-75 284.6 258 57.0
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 1.6e-74 283.5 235 60.4
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 2.6e-74 282.7 241 60.2
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 3.5e-74 282.3 240 57.9
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 3.5e-74 282.3 235 60.4
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 4.5e-74 282.0 245 59.2
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 1.0e-73 280.8 235 60.0
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 3.8e-73 278.9 223 61.0
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 5.0e-73 278.5 253 54.9
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 8.5e-73 277.7 240 57.9
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 1.1e-72 277.3 241 59.8
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 1.5e-72 276.9 235 59.1
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.9e-72 276.6 243 56.4
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 1.9e-72 276.6 232 60.3
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 3.2e-72 275.8 230 59.6
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 4.2e-72 275.4 240 55.8
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 1.2e-71 273.9 255 55.7
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 1.2e-71 273.9 232 58.6
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 1.6e-71 273.5 250 53.6
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 2.1e-71 273.1 246 54.5
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 2.7e-71 272.7 253 52.6
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 2.7e-71 272.7 247 56.3
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 6.1e-71 271.6 241 54.4
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 1.8e-70 270.0 225 60.9
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 3.0e-70 269.2 238 54.6
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 5.2e-70 268.5 258 50.4
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 6.7e-70 268.1 241 54.8
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 8.8e-70 267.7 228 57.0
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.0e-69 266.5 236 55.9
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 3.3e-69 265.8 241 53.9
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.3e-69 265.8 238 56.3
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 9.7e-69 264.2 231 54.1
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 9.7e-69 264.2 242 53.3
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 1.7e-68 263.5 231 53.7
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 8.2e-68 261.2 238 55.5
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 1.1e-67 260.8 232 55.2
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 1.2e-66 257.3 254 51.2
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 1.6e-66 256.9 230 55.2
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 5.9e-66 255.0 231 53.7
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 5.9e-66 255.0 230 54.3
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 1.3e-65 253.8 241 51.9
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 2.2e-65 253.1 240 52.5
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 6.5e-65 251.5 242 52.1
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 8.5e-65 251.1 242 50.8
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 1.1e-64 250.8 230 53.5
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 1.5e-64 250.4 249 50.2
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 5.5e-64 248.4 232 50.9
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 7.2e-64 248.1 255 49.0
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 2.7e-63 246.1 244 50.8
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 3.6e-63 245.7 238 49.2
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 2.0e-61 240.0 236 48.7
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 9.8e-61 237.7 238 47.9
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 1.7e-60 236.9 236 47.9
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 5.4e-59 231.9 249 46.6
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 5.9e-58 228.4 237 50.2
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 8.6e-57 224.6 239 49.0
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 1.1e-56 224.2 237 49.4
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 1.1e-56 224.2 237 49.4
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.9e-56 223.4 237 49.4
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 1.9e-56 223.4 237 49.4
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.5e-56 223.0 187 59.9
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 5.5e-56 221.9 245 49.8
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 5.5e-56 221.9 241 46.9
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 5.5e-56 221.9 204 52.9
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 9.5e-56 221.1 241 48.5
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 1.6e-55 220.3 240 49.6
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 1.6e-55 220.3 172 59.9
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 3.6e-55 219.2 230 48.7
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 4.7e-55 218.8 235 47.7
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 8.0e-55 218.0 239 49.8
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.4e-54 217.2 239 49.4
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 3.0e-54 216.1 220 50.0
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 4.0e-54 215.7 170 62.9
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 8.8e-54 214.5 235 49.8
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.5e-53 213.8 167 59.9
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.6e-53 213.0 244 44.7
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.4e-53 212.2 246 44.7
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 6.3e-52 208.4 235 45.1
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.4e-51 206.5 234 47.4
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 4.1e-51 205.7 220 48.2
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 6.1e-47 191.8 232 48.3
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 6.1e-47 191.8 228 42.5
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 8.0e-47 191.4 155 61.9
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 3.4e-45 186.0 222 43.7
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 9.8e-45 184.5 235 46.8
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 2.9e-44 183.0 307 34.9
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 1.1e-43 181.0 299 35.8
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 1.4e-43 180.6 180 51.7
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 1.2e-39 167.5 246 38.6
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 9.8e-37 157.9 156 48.1
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 2.2e-36 156.8 157 50.3
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 1.1e-35 154.5 251 34.7
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 5.4e-35 152.1 157 49.0
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 1.6e-34 150.6 159 47.8
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 3.5e-34 149.4 230 35.2
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 7.8e-26 121.7 87 64.4
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 7.8e-26 121.7 154 41.6
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 3.9e-25 119.4 99 56.6
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 5.2e-22 109.0 88 55.7
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 7.6e-21 105.1 347 24.5
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 1.7e-20 104.0 103 52.4
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.1e-19 101.3 78 56.4
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.4e-19 100.9 63 68.3
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.9e-19 100.5 117 50.4
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 4.1e-19 99.4 155 41.3
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 5.4e-19 99.0 83 54.2
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 9.2e-19 98.2 149 38.9
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.7e-18 96.7 67 65.7
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 6.0e-18 95.5 111 44.1
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 1.1e-11 74.7 63 57.1


User provided reference genes

Program Settings