Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.3e-145 518.8 261 100.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 6.1e-85 318.2 275 61.1
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 8.7e-84 314.3 209 70.8
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 8.7e-84 314.3 197 74.6
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.9e-83 313.2 184 76.6
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.9e-83 313.2 184 76.6
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 5.7e-83 311.6 223 69.5
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 9.7e-83 310.8 246 63.8
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.3e-82 310.5 255 63.5
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.3e-82 310.5 186 76.3
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.8e-82 309.3 253 62.1
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 4.8e-82 308.5 249 62.2
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 6.3e-82 308.1 277 58.8
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.1e-81 307.4 250 63.6
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 5.3e-81 305.1 215 68.4
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 6.9e-81 304.7 257 63.4
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.5e-80 303.5 215 69.3
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 2.6e-80 302.8 213 68.5
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 2.6e-80 302.8 249 62.2
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.6e-80 302.8 185 76.2
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.0e-79 300.8 199 69.8
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.0e-79 300.8 228 64.9
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.7e-79 300.1 228 64.5
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 2.9e-79 299.3 242 62.4
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 6.5e-79 298.1 233 62.7
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 8.5e-79 297.7 276 59.1
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.4e-78 297.0 224 64.7
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.4e-78 297.0 204 68.6
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 1.4e-78 297.0 285 56.1
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.5e-78 296.2 256 62.1
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 2.5e-78 296.2 200 69.5
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.5e-78 296.2 218 65.6
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 5.5e-78 295.0 244 62.7
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.5e-78 295.0 260 57.3
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.5e-78 295.0 278 56.8
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 9.4e-78 294.3 241 61.0
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 1.2e-77 293.9 239 61.9
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.6e-77 293.5 274 57.7
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.6e-77 293.5 199 70.9
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.6e-77 293.5 260 60.4
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.6e-77 292.4 197 69.5
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 4.6e-77 292.0 253 62.8
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 6.1e-77 291.6 200 68.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 6.1e-77 291.6 236 61.4
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 7.9e-77 291.2 190 71.1
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 7.9e-77 291.2 253 59.7
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 1.4e-76 290.4 273 57.9
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.0e-76 289.3 202 67.3
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 3.9e-76 288.9 242 61.2
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.1e-75 287.3 220 63.6
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.5e-75 287.0 222 64.0
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.0e-75 286.6 223 62.3
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.5e-75 286.2 256 59.8
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 3.3e-75 285.8 200 68.0
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 4.3e-75 285.4 200 67.5
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 4.3e-75 285.4 235 58.7
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 5.7e-75 285.0 256 57.8
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 9.7e-75 284.3 232 60.3
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.7e-74 283.5 246 60.2
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 3.7e-74 282.3 225 61.8
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.8e-74 282.0 199 66.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 6.3e-74 281.6 253 57.3
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 8.2e-74 281.2 236 59.7
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 8.2e-74 281.2 236 59.7
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 2.4e-73 279.6 270 55.9
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.1e-73 278.9 198 64.1
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.3e-73 278.5 238 58.8
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 5.3e-73 278.5 258 57.8
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 9.1e-73 277.7 197 66.0
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.5e-72 276.9 262 56.5
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.0e-72 276.6 195 69.7
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 4.5e-72 275.4 200 64.5
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 5.9e-72 275.0 252 55.2
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 7.7e-72 274.6 185 69.7
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.2e-71 273.1 241 58.5
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 2.9e-71 272.7 199 65.8
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 5.0e-71 271.9 186 68.3
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 1.1e-70 270.8 242 58.7
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.5e-70 269.6 242 56.6
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 3.2e-70 269.2 240 57.9
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 5.5e-70 268.5 185 67.6
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 1.2e-69 267.3 236 57.6
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.1e-69 266.5 257 55.6
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.7e-69 265.4 281 52.7
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 6.1e-69 265.0 259 55.6
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 1.4e-68 263.8 217 60.4
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.8e-68 263.5 264 54.2
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.8e-68 263.5 215 61.9
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 3.0e-68 262.7 261 55.6
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 5.1e-68 261.9 239 58.6
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.5e-67 260.4 222 59.5
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 2.0e-67 260.0 175 69.7
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 4.4e-67 258.8 265 54.0
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 2.2e-66 256.5 283 49.1
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 2.4e-65 253.1 204 58.3
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 2.4e-65 253.1 230 58.7
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 4.1e-65 252.3 186 64.5
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 2.6e-64 249.6 218 57.3
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 5.9e-64 248.4 228 56.1
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 1.0e-63 247.7 203 62.1
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.3e-63 247.3 255 52.5
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 3.8e-63 245.7 177 67.8
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 6.5e-63 245.0 155 74.2
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.5e-62 243.8 199 59.8
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 3.2e-62 242.7 269 50.2
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 5.5e-62 241.9 254 51.6
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 6.1e-61 238.4 155 70.3
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.0e-60 237.7 199 59.3
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.4e-60 237.3 155 71.0
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.3e-60 236.5 199 58.8
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 5.2e-60 235.3 153 70.6
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 5.2e-60 235.3 227 55.9
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 6.7e-60 235.0 222 57.2
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 1.5e-59 233.8 200 58.5
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.5e-59 233.8 225 55.6
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.0e-59 233.4 177 62.7
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 2.6e-59 233.0 193 59.6
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 4.4e-59 232.3 175 61.7
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 4.4e-59 232.3 175 59.4
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 5.7e-59 231.9 145 75.2
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 9.7e-59 231.1 254 50.8
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 2.2e-58 229.9 234 51.3
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.1e-57 227.6 244 54.5
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 7.0e-57 224.9 154 68.8
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 9.1e-57 224.6 215 55.3
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.5e-54 217.2 200 55.0
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.5e-54 216.5 211 53.6
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 7.2e-54 214.9 156 64.1
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.6e-53 213.8 190 54.2
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 8.0e-53 211.5 286 46.5
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 1.4e-52 210.7 181 56.9
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.4e-52 210.7 187 57.8
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 4.0e-52 209.1 167 61.1
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.3e-50 204.1 209 54.1
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 4.1e-49 199.1 193 53.9
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 5.9e-48 195.3 148 61.5
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.3e-47 194.1 210 51.4
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 3.8e-47 192.6 179 53.1
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 6.8e-44 181.8 175 54.9
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 1.2e-43 181.0 194 49.5
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.7e-43 178.7 138 61.6
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 1.3e-42 177.6 252 43.7
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.8e-42 176.4 206 50.0
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.4e-41 173.3 201 50.7
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.1e-41 172.9 117 65.8
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 4.1e-41 172.6 155 57.4
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.6e-40 170.6 206 48.5
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.7e-40 169.9 215 47.9
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 6.6e-39 165.2 115 69.6
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.9e-38 163.7 182 47.3
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 9.5e-38 161.4 196 44.9
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 6.1e-37 158.7 129 57.4
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 3.0e-36 156.4 104 68.3
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 3.2e-33 146.4 154 47.4
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 7.8e-32 141.7 350 29.1
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.0e-31 141.4 200 39.5
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.0e-31 139.8 256 33.2
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.3e-30 136.3 192 42.7
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.1e-29 133.7 87 66.7
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.1e-29 133.7 87 66.7
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.4e-27 125.9 69 85.5
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.8e-27 125.6 69 84.1
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.7e-26 122.9 90 61.1
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 3.1e-20 103.2 103 55.3
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 4.0e-20 102.8 81 56.8
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.4e-17 94.4 60 63.3
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.7e-15 87.4 111 45.0
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 3.1e-12 76.6 81 50.6
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.9e-09 67.4 37 83.8
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 4.6e-08 62.8 31 80.6


User provided reference genes

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