Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 3.5e-86 321.6 165 100.0
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 5.0e-69 264.6 161 82.0
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 1.1e-68 263.5 162 81.5
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 1.9e-68 262.7 163 78.5
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 1.9e-68 262.7 158 82.3
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 3.3e-68 261.9 160 80.6
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 1.2e-67 260.0 160 80.6
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 2.1e-67 259.2 161 79.5
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 2.1e-67 259.2 160 80.0
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 2.8e-67 258.8 163 79.1
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 2.8e-67 258.8 158 82.9
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 4.7e-67 258.1 161 80.1
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 4.7e-67 258.1 162 79.0
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 6.1e-67 257.7 162 78.4
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 8.0e-67 257.3 160 80.0
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 1.0e-66 256.9 161 82.0
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 1.0e-66 256.9 165 77.0
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.4e-66 256.5 161 79.5
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 1.4e-66 256.5 161 79.5
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 1.8e-66 256.1 161 81.4
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 5.2e-66 254.6 160 79.4
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 5.2e-66 254.6 160 78.8
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 6.8e-66 254.2 161 81.4
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 8.9e-66 253.8 160 77.5
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 1.2e-65 253.4 157 79.6
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 2.0e-65 252.7 160 78.1
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 2.0e-65 252.7 160 76.9
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 2.6e-65 252.3 159 78.6
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 4.4e-65 251.5 159 77.4
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 9.8e-65 250.4 161 77.0
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 1.3e-64 250.0 158 77.8
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 1.7e-64 249.6 154 80.5
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 2.2e-64 249.2 147 83.0
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 2.9e-64 248.8 159 76.7
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 4.9e-64 248.1 158 76.6
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 4.9e-64 248.1 158 76.6
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 8.3e-64 247.3 151 83.4
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 1.1e-63 246.9 160 77.5
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.8e-63 246.1 158 75.9
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.8e-63 246.1 163 74.2
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 3.2e-63 245.4 162 75.9
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 3.2e-63 245.4 154 78.6
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 3.2e-63 245.4 162 76.5
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 3.2e-63 245.4 150 80.7
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 7.0e-63 244.2 146 81.5
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 7.0e-63 244.2 156 78.8
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 7.0e-63 244.2 158 76.6
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 9.2e-63 243.8 158 77.8
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 9.2e-63 243.8 150 78.7
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 9.2e-63 243.8 154 78.6
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.2e-62 243.4 156 78.8
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 1.2e-62 243.4 156 76.9
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 1.2e-62 243.4 156 76.9
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.2e-62 243.4 156 77.6
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 2.7e-62 242.3 151 78.8
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.7e-62 242.3 154 77.3
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 4.6e-62 241.5 161 75.8
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 4.6e-62 241.5 162 74.1
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.6e-62 241.5 156 76.3
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 5.9e-62 241.1 158 75.3
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 1.3e-61 240.0 158 75.3
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 2.3e-61 239.2 159 74.2
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 2.3e-61 239.2 150 78.7
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 5.0e-61 238.0 156 73.7
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 5.0e-61 238.0 157 75.2
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 5.0e-61 238.0 163 74.2
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 5.0e-61 238.0 163 74.2
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 6.6e-61 237.7 149 78.5
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 1.1e-60 236.9 158 75.9
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 1.5e-60 236.5 163 73.6
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 1.9e-60 236.1 163 73.0
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.9e-60 236.1 163 73.6
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 1.9e-60 236.1 146 80.1
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 3.3e-60 235.3 163 73.0
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 3.3e-60 235.3 163 73.0
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 3.3e-60 235.3 158 74.1
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 4.3e-60 235.0 163 71.8
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 4.3e-60 235.0 147 75.5
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 7.3e-60 234.2 158 74.1
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 1.2e-59 233.4 161 70.8
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.2e-59 233.4 163 71.2
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 1.2e-59 233.4 162 71.6
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 1.2e-59 233.4 163 71.8
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.8e-59 232.3 141 80.9
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 4.7e-59 231.5 151 76.8
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 6.2e-59 231.1 157 74.5
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.0e-58 230.3 144 79.9
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 3.1e-58 228.8 180 67.8
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 6.8e-58 227.6 151 73.5
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 6.8e-58 227.6 190 64.7
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 8.9e-58 227.3 149 75.8
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.6e-57 225.7 156 75.0
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 2.2e-56 222.6 156 69.9
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 2.7e-54 215.7 178 66.3
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 4.6e-54 214.9 154 71.4
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 9.8e-49 197.2 149 62.4
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.2e-48 196.1 165 63.6
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 7.8e-46 187.6 152 59.2
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 6.6e-45 184.5 158 59.5
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 1.6e-43 179.9 96 87.5
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 4.7e-43 178.3 96 87.5
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 1.5e-41 173.3 119 71.4
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 3.8e-40 168.7 112 75.0
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 4.9e-40 168.3 146 61.0
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 7.8e-38 161.0 157 52.9
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.0e-37 160.6 161 56.5
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 2.3e-37 159.5 265 41.1
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 8.6e-37 157.5 159 49.7
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.5e-36 156.8 113 70.8
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 8.1e-35 151.0 155 48.4
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 6.0e-30 134.8 141 47.5
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 8.1e-27 124.4 83 74.7
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.0e-18 95.5 64 70.3
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.5e-17 92.0 74 64.9
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.2e-16 89.7 93 52.7
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 1.9e-15 86.7 64 68.8
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 4.6e-14 82.0 49 77.6
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 2.3e-13 79.7 55 70.9
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 6.7e-13 78.2 45 80.0
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 1.8e-10 70.1 137 34.3
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 1.5e-09 67.0 37 83.8
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 7.6e-09 64.7 37 81.1
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.5e-07 59.7 52 63.5


User provided reference genes

Program Settings