Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 4.1e-167 591.3 287 100.0
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 1.8e-85 320.1 217 67.7
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 2.3e-85 319.7 215 69.3
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 1.5e-84 317.0 215 67.0
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 1.9e-84 316.6 217 66.8
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 2.5e-84 316.2 215 67.4
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 1.3e-83 313.9 216 65.7
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 1.6e-83 313.5 211 67.3
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 2.1e-83 313.2 225 65.8
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 4.8e-83 312.0 230 64.8
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 3.1e-82 309.3 225 62.2
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 4.0e-82 308.9 215 67.4
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 5.3e-82 308.5 215 65.6
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 9.0e-82 307.8 219 65.3
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.5e-81 307.0 213 64.8
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 2.0e-81 306.6 221 64.3
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 2.6e-81 306.2 223 63.7
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 2.6e-81 306.2 223 63.2
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 2.6e-81 306.2 215 64.7
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 3.4e-81 305.8 221 62.4
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 4.5e-81 305.4 214 65.0
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 4.5e-81 305.4 215 63.7
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 5.8e-81 305.1 220 64.5
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 5.8e-81 305.1 221 63.8
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 7.6e-81 304.7 224 63.4
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 1.3e-80 303.9 216 63.4
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 2.2e-80 303.1 226 61.5
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 2.9e-80 302.8 218 63.3
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 4.9e-80 302.0 220 63.6
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 8.4e-80 301.2 226 60.2
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 8.4e-80 301.2 224 62.5
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 1.1e-79 300.8 210 64.3
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 1.4e-79 300.4 215 63.7
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 1.9e-79 300.1 213 64.3
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 4.2e-79 298.9 215 64.2
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 5.5e-79 298.5 218 63.3
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 5.5e-79 298.5 212 63.7
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 9.3e-79 297.7 215 62.3
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 1.6e-78 297.0 212 63.2
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.6e-78 297.0 212 62.7
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 2.7e-78 296.2 220 61.4
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 4.6e-78 295.4 214 64.5
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 6.0e-78 295.0 215 63.7
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 7.9e-78 294.7 212 63.2
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 1.0e-77 294.3 224 61.6
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 1.3e-77 293.9 215 63.3
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 1.3e-77 293.9 215 61.9
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 3.0e-77 292.7 223 60.1
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 3.9e-77 292.4 212 63.2
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 6.7e-77 291.6 213 62.0
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 1.1e-76 290.8 220 60.9
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 1.1e-76 290.8 212 60.4
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 1.1e-76 290.8 215 60.0
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 1.9e-76 290.0 217 59.9
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 3.3e-76 289.3 218 61.9
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 4.3e-76 288.9 214 62.6
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 1.3e-75 287.3 215 62.3
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 1.3e-75 287.3 215 61.9
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 1.6e-75 287.0 216 61.1
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 1.6e-75 287.0 215 58.6
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 2.8e-75 286.2 202 65.3
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 6.2e-75 285.0 215 61.4
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 6.2e-75 285.0 213 62.4
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 8.2e-75 284.6 215 61.4
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 1.4e-74 283.9 215 61.9
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 1.8e-74 283.5 215 59.1
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 2.4e-74 283.1 215 61.9
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 2.4e-74 283.1 215 61.9
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 2.4e-74 283.1 215 61.9
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 2.4e-74 283.1 215 61.9
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 2.4e-74 283.1 215 61.9
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 3.1e-74 282.7 214 59.8
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 5.3e-74 282.0 214 60.7
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 2.0e-73 280.0 185 67.6
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 2.6e-73 279.6 213 59.2
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 3.4e-73 279.3 208 61.5
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 3.4e-73 279.3 212 60.4
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 2.2e-72 276.6 216 57.9
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 6.5e-72 275.0 214 58.4
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 1.1e-71 274.2 228 57.9
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 1.4e-71 273.9 216 56.9
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 1.9e-71 273.5 227 56.4
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 1.9e-71 273.5 279 47.0
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 2.5e-71 273.1 212 57.5
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 4.3e-68 262.3 215 58.6
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 4.3e-68 262.3 217 56.2
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 7.4e-68 261.5 220 56.4
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 8.2e-67 258.1 215 54.9
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 8.2e-67 258.1 220 54.1
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 3.1e-66 256.1 214 56.1
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 5.3e-66 255.4 196 61.7
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 2.6e-65 253.1 248 48.8
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 5.9e-65 251.9 173 67.1
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 2.9e-64 249.6 172 67.4
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 2.9e-64 249.6 215 55.3
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 6.1e-62 241.9 208 52.9
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 1.8e-61 240.4 173 62.4
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 3.0e-61 239.6 208 53.8
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 3.9e-61 239.2 209 57.4
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 1.1e-58 231.1 213 51.2
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 5.9e-57 225.3 180 59.4
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 5.9e-57 225.3 173 59.5
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 4.2e-55 219.2 212 49.5
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 6.1e-54 215.3 213 48.4
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 6.7e-53 211.8 213 47.4
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 5.7e-52 208.8 151 62.9
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 5.7e-52 208.8 217 42.4
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 2.8e-51 206.5 204 49.0
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 1.4e-50 204.1 155 61.3
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 1.5e-49 200.7 207 47.3
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 1.4e-47 194.1 213 45.5
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 2.3e-45 186.8 184 52.2
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 1.1e-44 184.5 208 45.7
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 2.6e-44 183.3 158 51.9
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 8.2e-43 178.3 137 56.2
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 2.0e-36 157.1 161 48.4
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 8.3e-35 151.8 110 61.8
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 1.0e-29 134.8 226 32.7
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 1.2e-25 121.3 79 68.4
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 2.5e-23 113.6 88 62.5
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 8.0e-22 108.6 92 54.3
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 3.5e-17 93.2 221 29.0
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 2.3e-13 80.5 53 69.8
CBR_g56708 Chara braunii HOM05D009436 ORTHO05D000048 1.2e-12 78.2 116 34.5
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 1.9e-10 70.9 65 52.3
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 2.4e-10 70.5 43 65.1
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 9.2e-10 68.6 94 43.6
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 8.6e-08 62.0 50 50.0
PSO782G2289 Papaver somniferum HOM05D000256 ORTHO05D000119 4.3e-07 59.7 46 56.5


User provided reference genes

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