Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 6.5e-134 480.7 241 100.0
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 7.3e-77 291.2 198 78.3
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 4.7e-76 288.5 189 77.8
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 4.7e-76 288.5 189 77.8
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.4e-75 287.0 189 77.8
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.4e-75 287.0 214 70.6
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.8e-75 286.6 165 88.5
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 2.4e-75 286.2 196 74.5
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 8.9e-75 284.3 193 77.2
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.2e-74 283.9 177 80.2
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 2.0e-74 283.1 169 85.8
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 2.0e-74 283.1 202 73.3
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 2.6e-74 282.7 184 78.8
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 4.4e-74 282.0 199 74.4
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.3e-73 280.4 169 85.2
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.7e-73 280.0 174 81.6
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 2.2e-73 279.6 186 78.5
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 2.2e-73 279.6 174 81.0
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.8e-73 278.9 189 76.7
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 3.8e-73 278.9 177 79.7
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 6.4e-73 278.1 169 83.4
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 8.4e-73 277.7 203 72.9
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.9e-72 276.6 221 67.4
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 4.2e-72 275.4 174 82.2
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 4.2e-72 275.4 174 82.2
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 5.4e-72 275.0 162 86.4
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 5.4e-72 275.0 157 87.3
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 5.4e-72 275.0 174 80.5
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 5.4e-72 275.0 174 79.9
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 7.1e-72 274.6 170 82.9
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 9.3e-72 274.2 206 69.4
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 1.6e-71 273.5 152 90.1
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.6e-71 273.5 177 78.0
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 2.1e-71 273.1 149 93.3
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 3.5e-71 272.3 181 76.8
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 4.6e-71 271.9 169 82.2
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 4.6e-71 271.9 149 92.6
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.6e-71 271.9 180 76.1
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 4.6e-71 271.9 158 86.1
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 4.6e-71 271.9 158 86.1
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 6.0e-71 271.6 178 79.8
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 7.8e-71 271.2 152 89.5
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.0e-70 270.8 192 71.9
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.7e-70 270.0 152 88.8
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 2.3e-70 269.6 177 76.8
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.3e-70 269.6 197 71.6
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 2.3e-70 269.6 179 78.8
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 2.3e-70 269.6 191 73.8
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 2.3e-70 269.6 174 79.9
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 3.9e-70 268.9 176 78.4
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.9e-70 268.9 185 75.7
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.9e-70 268.9 183 76.5
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 5.1e-70 268.5 221 67.9
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 5.1e-70 268.5 224 64.7
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 6.6e-70 268.1 159 86.8
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 6.6e-70 268.1 186 72.6
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.1e-69 267.3 219 67.6
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.5e-69 266.9 210 68.6
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 1.5e-69 266.9 157 84.1
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.5e-69 266.9 186 72.6
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.5e-69 266.9 186 72.6
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.5e-69 266.2 169 79.3
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 5.6e-69 265.0 200 71.5
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 7.3e-69 264.6 170 78.8
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 7.3e-69 264.6 225 66.2
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 7.3e-69 264.6 225 66.2
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 7.3e-69 264.6 174 77.6
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 7.3e-69 264.6 174 77.6
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 7.3e-69 264.6 165 80.6
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 9.6e-69 264.2 191 72.3
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 9.6e-69 264.2 176 77.3
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.3e-68 263.8 187 74.3
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.3e-68 263.8 183 76.5
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.6e-68 263.5 208 69.7
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 1.6e-68 263.5 165 81.2
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.6e-68 263.5 152 88.2
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.6e-68 263.5 189 72.5
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.6e-68 263.5 147 90.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 2.1e-68 263.1 171 80.1
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 2.8e-68 262.7 157 83.4
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 2.8e-68 262.7 158 82.9
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 3.6e-68 262.3 175 76.0
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 4.8e-68 261.9 216 67.1
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 4.8e-68 261.9 152 86.8
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 8.1e-68 261.2 200 70.5
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 8.1e-68 261.2 217 66.4
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 8.1e-68 261.2 200 71.0
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 8.1e-68 261.2 174 76.4
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 1.1e-67 260.8 199 69.8
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.1e-67 260.8 175 75.4
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 1.1e-67 260.8 175 75.4
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 1.4e-67 260.4 154 87.0
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.4e-67 260.4 166 80.1
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 3.1e-67 259.2 165 79.4
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 6.9e-67 258.1 200 68.5
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 9.0e-67 257.7 150 86.7
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 2.6e-66 256.1 160 83.1
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 4.4e-66 255.4 158 80.4
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.3e-65 253.8 168 78.0
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.7e-65 253.4 157 82.2
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.7e-65 253.4 211 64.9
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.9e-65 252.7 186 71.0
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.9e-65 252.7 168 76.8
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 2.9e-65 252.7 159 78.0
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 4.9e-65 251.9 184 71.7
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 4.9e-65 251.9 167 77.8
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 6.4e-65 251.5 145 86.9
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 6.4e-65 251.5 148 84.5
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 6.0e-63 245.0 172 72.1
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 5.1e-62 241.9 170 76.5
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 5.1e-62 241.9 193 70.5
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.3e-60 237.3 156 78.2
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 3.1e-59 232.6 142 82.4
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 3.4e-58 229.2 142 82.4
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 4.5e-58 228.8 159 75.5
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 9.9e-58 227.6 189 63.5
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 3.8e-57 225.7 133 85.0
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 4.2e-56 222.2 142 76.8
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 1.2e-55 220.7 299 46.8
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 9.0e-51 204.5 173 66.5
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.5e-50 203.8 161 68.3
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 5.8e-50 201.8 112 91.1
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 1.3e-46 190.7 143 68.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 8.2e-44 181.4 115 75.7
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 2.5e-40 169.9 88 98.9
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 9.3e-40 167.9 89 96.6
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 9.3e-40 167.9 92 91.3
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.6e-39 167.2 89 94.4
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 2.1e-39 166.8 148 59.5
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 6.1e-39 165.2 122 65.6
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 7.7e-34 148.3 174 51.1
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.3e-33 147.5 160 54.4
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.0e-30 136.3 99 66.7
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.1e-27 127.9 110 57.3
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.6e-23 112.8 142 45.1
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 3.7e-20 102.8 68 73.5
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.8e-19 100.5 89 57.3
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 7.7e-18 95.1 70 65.7
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 4.2e-16 89.4 199 34.7
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 2.7e-10 70.1 101 41.6
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 7.7e-10 68.6 67 47.8


User provided reference genes

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