Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.1e-186 655.6 339 100.0
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.5e-107 393.7 333 62.5
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 9.0e-89 331.3 310 59.0
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.1e-85 320.1 308 57.1
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.9e-83 313.5 326 54.6
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.4e-80 302.8 286 58.0
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 7.9e-77 291.6 271 56.1
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 1.0e-76 291.2 259 58.3
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 6.2e-74 282.0 265 54.7
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.1e-73 281.2 260 55.4
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.1e-73 281.2 260 55.4
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.1e-73 281.2 264 56.8
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.4e-73 280.8 343 49.3
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.0e-72 276.9 260 55.4
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 2.0e-72 276.9 269 53.9
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 2.0e-72 276.9 265 54.3
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.6e-72 276.6 308 51.9
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 1.7e-71 273.9 273 54.2
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.8e-71 272.7 316 48.7
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 6.5e-71 271.9 278 51.1
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 8.4e-71 271.6 264 53.4
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.4e-70 270.8 315 49.5
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.4e-70 270.8 315 48.6
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 2.5e-70 270.0 261 54.4
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 2.5e-70 270.0 271 55.0
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 4.2e-70 269.2 316 49.1
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.2e-69 267.7 272 54.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 2.7e-69 266.5 270 52.2
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 4.6e-69 265.8 270 51.9
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.0e-68 264.6 265 51.7
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.0e-68 264.6 316 50.0
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.8e-68 263.8 271 50.9
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 3.0e-68 263.1 281 49.5
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 3.0e-68 263.1 281 49.5
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 5.1e-68 262.3 279 50.5
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 6.7e-68 261.9 267 49.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 2.5e-67 260.0 261 52.1
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.7e-67 258.8 284 49.6
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.7e-67 258.8 270 50.7
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 9.7e-67 258.1 290 47.9
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.6e-66 257.3 266 51.5
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 2.8e-66 256.5 295 48.8
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 3.7e-66 256.1 327 45.3
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 4.8e-66 255.8 266 51.5
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.8e-66 255.8 266 48.1
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 8.2e-66 255.0 273 51.6
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.4e-65 254.2 262 50.4
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 1.8e-65 253.8 287 47.7
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 3.1e-65 253.1 268 48.1
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 5.3e-65 252.3 264 50.8
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 5.3e-65 252.3 260 49.6
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 6.9e-65 251.9 266 47.4
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 6.9e-65 251.9 274 49.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 9.0e-65 251.5 259 52.9
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 9.0e-65 251.5 259 52.9
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-64 251.1 259 52.5
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.5e-64 250.8 309 44.3
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.0e-64 250.4 265 49.8
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.0e-64 250.4 297 47.1
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 2.6e-64 250.0 260 48.8
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 3.4e-64 249.6 265 49.4
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 3.4e-64 249.6 265 49.8
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 4.5e-64 249.2 269 49.8
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 4.5e-64 249.2 291 46.7
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 5.9e-64 248.8 276 46.7
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.0e-63 248.1 265 49.4
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.7e-63 247.3 269 47.6
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.1e-62 244.6 261 50.6
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.4e-62 244.2 295 47.1
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.9e-62 243.8 266 47.7
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.5e-62 243.4 288 47.9
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 2.5e-62 243.4 286 45.5
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.5e-62 243.4 294 48.3
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 9.4e-62 241.5 295 46.4
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 9.4e-62 241.5 279 47.7
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 9.4e-62 241.5 266 48.1
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.6e-61 240.7 260 46.5
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.1e-61 240.4 295 46.1
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 2.7e-61 240.0 270 45.2
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 2.7e-61 240.0 256 50.0
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 4.6e-61 239.2 291 46.4
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 4.6e-61 239.2 325 45.5
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 7.9e-61 238.4 284 46.1
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 7.9e-61 238.4 284 46.1
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.9e-61 238.4 260 48.1
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 7.9e-61 238.4 260 48.1
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 7.9e-61 238.4 264 47.7
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.0e-60 236.5 260 45.4
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.0e-60 236.5 260 45.4
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.9e-60 236.1 260 47.7
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 6.7e-60 235.3 279 46.2
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 8.8e-60 235.0 293 46.1
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 1.5e-59 234.2 264 47.3
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-59 234.2 312 43.3
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 2.5e-59 233.4 289 46.4
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 3.3e-59 233.0 263 46.0
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 4.3e-59 232.6 290 45.9
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 4.3e-59 232.6 268 47.0
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 7.4e-59 231.9 263 45.6
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 2.2e-58 230.3 259 45.9
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 2.8e-58 229.9 280 45.7
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.8e-58 229.9 263 45.2
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-57 228.0 295 44.4
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.4e-57 227.6 320 42.5
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.8e-57 227.3 274 44.5
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 5.3e-57 225.7 262 47.7
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.7e-56 221.9 262 48.1
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.7e-55 220.7 265 44.5
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.5e-55 218.8 262 47.7
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 3.2e-54 216.5 262 47.3
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.7e-53 213.4 290 41.7
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.4e-52 211.1 243 46.5
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.3e-52 210.3 290 41.4
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 2.0e-51 207.2 281 43.1
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 5.7e-51 205.7 268 42.9
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 2.8e-50 203.4 267 40.1
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.5e-48 197.6 266 43.2
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.2e-46 189.5 271 42.8
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.0e-44 184.9 260 41.9
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.8e-44 184.1 220 42.7
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.6e-43 180.3 126 70.6
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.4e-43 179.5 140 64.3
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.8e-41 174.1 242 40.9
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.7e-39 167.5 266 38.3
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.5e-38 163.7 269 34.2
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 2.3e-36 157.1 296 38.2
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 8.3e-34 148.7 262 32.8
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.4e-33 147.9 260 32.7
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 3.1e-33 146.7 260 36.5
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 5.3e-33 146.0 115 62.6
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.0e-31 141.7 257 31.9
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.5e-31 139.0 121 57.9
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.1e-30 138.3 268 32.1
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-30 137.9 121 58.7
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 9.4e-30 135.2 91 69.2
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 9.1e-25 118.6 170 37.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.1e-21 107.5 96 53.1
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.1e-21 107.5 96 53.1
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.2e-19 101.7 87 52.9
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 2.6e-19 100.5 93 50.5
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 2.2e-18 97.4 92 45.7
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.7e-16 90.5 80 48.8
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 2.9e-15 87.0 246 27.2
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.5e-14 84.7 122 39.3
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 4.4e-11 73.2 91 38.5
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 9.8e-11 72.0 58 56.9
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.7e-10 71.2 77 51.9
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 7.0e-09 65.9 67 50.7
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 4.3e-06 56.6 54 53.7
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 7.3e-06 55.8 50 58.0
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 9.5e-06 55.5 37 67.6


User provided reference genes

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