Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 5.8e-138 494.2 245 100.0
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 5.6e-109 397.9 222 86.0
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 9.6e-109 397.1 222 86.0
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 1.6e-108 396.4 222 86.5
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 1.6e-108 396.4 222 86.5
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 2.8e-108 395.6 222 85.6
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 2.8e-108 395.6 222 84.2
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 4.8e-108 394.8 222 86.0
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 4.8e-108 394.8 222 85.6
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 6.2e-108 394.4 222 84.2
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 8.1e-108 394.0 222 86.0
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 1.1e-107 393.7 222 84.7
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 1.4e-107 393.3 222 84.2
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 2.4e-107 392.5 222 82.9
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 2.4e-107 392.5 222 86.0
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 4.0e-107 391.7 222 84.2
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 6.9e-107 391.0 222 84.2
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 6.9e-107 391.0 222 83.3
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 9.0e-107 390.6 222 84.7
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 3.4e-106 388.7 220 84.5
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 4.5e-106 388.3 222 82.4
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 5.8e-106 387.9 222 84.2
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 7.6e-106 387.5 222 83.8
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 7.6e-106 387.5 222 83.8
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 1.0e-105 387.1 222 83.8
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 1.3e-105 386.7 222 82.9
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 1.3e-105 386.7 222 83.3
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 1.3e-105 386.7 222 85.1
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 1.7e-105 386.3 221 83.3
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 1.7e-105 386.3 222 84.2
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 3.8e-105 385.2 224 83.9
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 4.9e-105 384.8 222 82.9
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 6.5e-105 384.4 222 82.4
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 8.4e-105 384.0 222 81.1
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 1.1e-104 383.6 222 82.4
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 1.4e-104 383.3 222 81.5
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 1.4e-104 383.3 222 82.9
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 2.5e-104 382.5 222 82.4
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 2.5e-104 382.5 222 82.0
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 3.2e-104 382.1 222 82.4
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 1.2e-103 380.2 222 81.5
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 2.1e-103 379.4 232 81.0
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 2.1e-103 379.4 222 81.1
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 3.5e-103 378.6 223 84.3
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 3.5e-103 378.6 222 83.3
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 4.6e-103 378.3 222 81.5
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 6.0e-103 377.9 222 80.6
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 1.0e-102 377.1 222 82.4
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 1.0e-102 377.1 222 81.5
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 1.3e-102 376.7 222 80.6
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 3.0e-102 375.6 222 79.7
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 3.9e-102 375.2 222 79.7
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 3.9e-102 375.2 222 79.3
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 5.1e-102 374.8 222 81.1
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 1.9e-101 372.9 222 79.7
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.9e-101 372.9 220 79.5
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 2.5e-101 372.5 222 81.5
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 2.5e-101 372.5 222 79.3
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 2.5e-101 372.5 222 81.5
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 4.3e-101 371.7 217 82.5
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 5.7e-101 371.3 222 81.1
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 1.3e-100 370.2 222 80.2
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 2.8e-100 369.0 222 79.7
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 3.7e-100 368.6 222 80.6
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 1.4e-99 366.7 222 78.8
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 4.1e-99 365.2 222 78.8
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 4.1e-99 365.2 222 80.6
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 5.3e-99 364.8 222 78.8
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 9.0e-99 364.0 222 78.4
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 9.0e-99 364.0 222 78.4
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 1.2e-98 363.6 222 78.4
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 1.2e-98 363.6 222 78.8
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 1.2e-98 363.6 224 79.5
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 1.5e-98 363.2 222 79.3
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 2.6e-98 362.5 222 77.5
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 3.4e-98 362.1 222 77.9
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 2.2e-97 359.4 222 77.5
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 3.8e-97 358.6 222 77.9
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 1.9e-96 356.3 223 77.6
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 1.9e-96 356.3 222 77.0
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 1.3e-94 350.1 219 75.3
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 8.2e-92 340.9 222 76.1
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 1.1e-91 340.5 219 73.1
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 5.3e-91 338.2 198 84.3
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 3.4e-90 335.5 223 72.2
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 1.3e-89 333.6 222 77.0
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 2.9e-89 332.4 223 70.9
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 1.6e-87 326.6 194 80.9
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 1.6e-87 326.6 222 73.0
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 1.5e-85 320.1 185 84.3
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 1.7e-84 316.6 221 67.9
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 6.9e-83 311.2 180 82.8
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 1.4e-75 287.0 198 73.7
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 2.4e-75 286.2 177 78.0
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 2.5e-72 276.2 325 49.2
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 3.2e-72 275.8 222 64.9
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 7.2e-72 274.6 249 59.8
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 1.2e-69 267.3 188 70.2
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 2.5e-64 249.6 192 60.9
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 4.2e-64 248.8 219 60.7
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 1.4e-59 233.8 133 84.2
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 2.3e-57 226.5 166 71.7
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 8.0e-55 218.0 127 81.1
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 7.8e-50 201.4 293 39.2
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 1.0e-46 191.0 106 83.0
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 8.9e-46 188.0 126 70.6
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 4.1e-43 179.1 231 43.7
HPP92_005618 Vanilla planifolia HOM05D006459 ORTHO05D008414 9.2e-43 177.9 126 70.6
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 2.7e-34 149.8 256 38.3
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 1.0e-33 147.9 235 40.9
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 2.6e-29 133.3 75 77.3
SEGI_06082 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 4.1e-19 99.4 76 63.2
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 5.1e-17 92.4 56 85.7
SMO272G0012 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 3.0e-09 66.6 46 65.2
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 5.1e-09 65.9 142 33.1
vmacro16045 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 1.4e-06 57.8 35 80.0


User provided reference genes

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