Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 9.5e-47 190.7 170 100.0
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.0e-20 103.2 161 54.7
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 2.7e-17 92.8 171 60.2
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.7e-17 92.8 50 82.0
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.5e-17 92.4 227 46.3
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 3.5e-17 92.4 221 40.7
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 6.0e-17 91.7 67 71.6
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.1e-16 88.6 50 78.0
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 6.6e-16 88.2 50 76.0
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.5e-15 87.0 50 74.0
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.5e-15 87.0 221 49.3
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.9e-15 86.7 50 76.0
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.5e-15 86.3 242 49.6
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.5e-15 86.3 242 49.6
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 3.3e-15 85.9 244 44.3
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 4.3e-15 85.5 50 78.0
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 5.6e-15 85.1 50 74.0
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.3e-15 84.7 50 72.0
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.3e-15 84.7 50 72.0
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 7.3e-15 84.7 50 72.0
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 9.6e-15 84.3 67 74.6
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.3e-14 84.0 50 70.0
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 1.6e-14 83.6 50 72.0
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.6e-14 83.6 50 72.0
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.6e-14 83.6 47 72.3
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 2.1e-14 83.2 248 43.5
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 2.1e-14 83.2 67 71.6
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.8e-14 82.8 50 72.0
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.6e-14 82.4 50 72.0
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.6e-14 82.4 47 72.3
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 3.6e-14 82.4 50 70.0
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 3.6e-14 82.4 50 70.0
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 3.6e-14 82.4 50 72.0
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 3.6e-14 82.4 50 70.0
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 3.6e-14 82.4 50 70.0
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 3.6e-14 82.4 50 70.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 4.8e-14 82.0 50 72.0
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 4.8e-14 82.0 67 73.1
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 6.2e-14 81.6 50 70.0
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 6.2e-14 81.6 50 70.0
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 6.2e-14 81.6 50 70.0
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 6.2e-14 81.6 50 70.0
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 8.1e-14 81.3 50 68.0
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 8.1e-14 81.3 50 68.0
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 8.1e-14 81.3 50 68.0
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 8.1e-14 81.3 50 70.0
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 8.1e-14 81.3 50 70.0
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 1.1e-13 80.9 50 74.0
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.1e-13 80.9 50 68.0
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.1e-13 80.9 50 68.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.4e-13 80.5 50 70.0
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 1.8e-13 80.1 48 75.0
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.4e-13 79.7 44 79.5
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 2.4e-13 79.7 50 68.0
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.4e-13 79.7 50 70.0
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 2.4e-13 79.7 50 72.0
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 3.1e-13 79.3 49 69.4
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 3.1e-13 79.3 50 72.0
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 3.1e-13 79.3 52 71.2
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 3.1e-13 79.3 67 70.1
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.0e-13 79.0 72 69.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 4.0e-13 79.0 52 69.2
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.0e-13 79.0 49 71.4
Sc19g0006390 Simmondsia chinensis HOM05D004463 ORTHO05D004724 5.3e-13 78.6 125 50.4
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.3e-13 78.6 46 69.6
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 6.9e-13 78.2 50 70.0
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 6.9e-13 78.2 51 70.6
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 6.9e-13 78.2 47 70.2
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 6.9e-13 78.2 52 69.2
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.9e-13 78.2 50 72.0
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 9.0e-13 77.8 51 70.6
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 9.0e-13 77.8 51 70.6
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 9.0e-13 77.8 53 67.9
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 9.0e-13 77.8 53 67.9
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.5e-12 77.0 67 68.7
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.5e-12 77.0 50 66.0
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.0e-12 76.6 50 70.0
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.6e-12 76.3 50 66.0
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.6e-12 76.3 52 67.3
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 2.6e-12 76.3 50 66.0
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 2.6e-12 76.3 52 67.3
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 2.6e-12 76.3 50 66.0
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.6e-12 76.3 47 70.2
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.6e-12 76.3 49 71.4
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 4.5e-12 75.5 50 68.0
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 4.5e-12 75.5 168 58.3
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 5.8e-12 75.1 56 62.5
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.6e-12 74.7 70 65.7
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.6e-12 74.7 70 64.3
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.6e-12 74.7 70 64.3
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 7.6e-12 74.7 50 70.0
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.3e-11 73.9 49 67.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.3e-11 73.9 49 67.3
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 1.3e-11 73.9 52 67.3
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 2.2e-11 73.2 50 62.0
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 3.8e-11 72.4 53 62.3
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.8e-11 72.4 53 62.3
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 6.4e-11 71.6 51 64.7
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 6.4e-11 71.6 50 64.0
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.4e-11 71.6 49 63.3
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.4e-11 71.6 49 63.3
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 8.4e-11 71.2 47 72.3
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.1e-10 70.9 52 63.5
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.1e-10 70.9 51 66.7
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.4e-10 70.5 58 60.3
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.9e-10 70.1 49 61.2
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.9e-10 70.1 76 60.5
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 2.4e-10 69.7 56 57.1
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 4.2e-10 68.9 51 64.7
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.4e-10 68.6 51 66.7
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 5.4e-10 68.6 47 70.2
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 7.1e-10 68.2 150 39.3
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 4.6e-09 65.5 55 80.0
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.6e-09 65.5 51 64.7
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 4.6e-09 65.5 42 64.3
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 4.6e-09 65.5 42 64.3
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 7.9e-09 64.7 50 60.0
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 7.9e-09 64.7 51 64.7
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 1.0e-08 64.3 60 53.3
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.0e-08 64.3 51 62.7
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.3e-08 63.9 56 58.9
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.8e-08 63.5 51 62.7
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 1.8e-08 63.5 48 64.6
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 1.8e-08 63.5 48 64.6
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 2.3e-08 63.2 51 62.7
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 3.0e-08 62.8 50 64.0
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 3.9e-08 62.4 51 62.7
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 6.7e-08 61.6 57 57.9
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 8.7e-08 61.2 51 62.7
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 8.7e-08 61.2 51 62.7
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 8.7e-08 61.2 48 62.5
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 8.7e-08 61.2 51 60.8
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 1.1e-07 60.8 46 58.7
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.1e-07 60.8 55 78.2
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 1.1e-07 60.8 50 62.0
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.5e-07 60.5 124 33.1
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 3.3e-07 59.3 50 56.0
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 4.3e-07 58.9 57 71.9
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.3e-07 58.9 50 62.0
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 5.6e-07 58.5 50 60.0
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 7.4e-07 58.2 51 56.9
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 7.4e-07 58.2 51 56.9
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 2.1e-06 56.6 50 60.0
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.1e-06 56.6 50 60.0
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.1e-06 56.6 50 60.0
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.1e-06 56.6 50 60.0
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 2.1e-06 56.6 50 60.0
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 2.8e-06 56.2 50 56.0
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 4.8e-06 55.5 58 55.2
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.2e-06 55.1 43 60.5
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 6.2e-06 55.1 48 54.2


User provided reference genes

Program Settings