Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 1.5e-86 322.8 157 100.0
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 4.8e-69 264.6 157 79.6
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 8.2e-69 263.8 154 78.6
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 4.0e-68 261.5 157 79.0
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 3.4e-67 258.5 155 78.7
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 7.6e-67 257.3 154 75.3
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 1.0e-66 256.9 151 78.1
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 2.2e-66 255.8 155 75.5
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 4.9e-66 254.6 154 75.3
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 2.1e-64 249.2 138 80.4
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 6.0e-64 247.7 138 80.4
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 7.9e-64 247.3 153 73.9
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 1.0e-63 246.9 147 76.2
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 2.3e-63 245.7 145 75.2
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 5.1e-63 244.6 153 73.2
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 5.1e-63 244.6 158 72.2
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 6.7e-63 244.2 137 80.3
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 6.7e-63 244.2 145 76.6
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 8.7e-63 243.8 149 75.8
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 1.5e-62 243.0 149 75.2
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.9e-62 242.7 135 80.7
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 1.9e-62 242.7 156 73.1
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 2.5e-62 242.3 150 74.0
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 2.5e-62 242.3 150 74.0
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 2.5e-62 242.3 150 74.0
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 2.5e-62 242.3 150 74.0
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 2.5e-62 242.3 150 74.0
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 3.3e-62 241.9 145 75.9
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 3.3e-62 241.9 145 75.9
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 4.3e-62 241.5 139 78.4
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 4.3e-62 241.5 135 80.0
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 5.7e-62 241.1 149 73.8
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 7.4e-62 240.7 150 73.3
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 7.4e-62 240.7 136 78.7
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 7.4e-62 240.7 135 80.0
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 9.7e-62 240.4 156 71.8
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 1.3e-61 240.0 149 73.2
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.3e-61 240.0 135 80.0
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 1.3e-61 240.0 149 73.8
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 2.1e-61 239.2 146 74.7
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 2.1e-61 239.2 134 79.9
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 2.8e-61 238.8 147 75.5
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 3.7e-61 238.4 155 69.7
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 3.7e-61 238.4 134 77.6
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 6.3e-61 237.7 155 69.0
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 8.2e-61 237.3 147 73.5
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 8.2e-61 237.3 135 77.0
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 1.4e-60 236.5 154 72.7
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.4e-60 236.5 147 72.1
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 2.4e-60 235.7 134 79.1
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 2.4e-60 235.7 150 74.0
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.1e-60 235.3 154 69.5
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.1e-60 235.3 154 69.5
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 4.1e-60 235.0 136 77.2
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 5.3e-60 234.6 134 76.9
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 6.9e-60 234.2 134 79.1
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 6.9e-60 234.2 166 65.7
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 6.9e-60 234.2 134 78.4
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 6.9e-60 234.2 149 71.8
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 6.9e-60 234.2 157 67.5
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 9.0e-60 233.8 134 76.1
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 9.0e-60 233.8 147 71.4
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 1.2e-59 233.4 154 68.8
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 1.2e-59 233.4 142 73.9
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 1.2e-59 233.4 135 77.0
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 1.2e-59 233.4 134 76.9
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 1.2e-59 233.4 153 69.9
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 1.2e-59 233.4 153 69.9
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 1.2e-59 233.4 153 69.9
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 1.5e-59 233.0 146 71.9
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 1.5e-59 233.0 149 71.8
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 2.6e-59 232.3 155 68.4
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 2.6e-59 232.3 156 69.9
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 2.6e-59 232.3 155 67.1
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 2.6e-59 232.3 152 71.7
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 3.4e-59 231.9 155 68.4
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 5.9e-59 231.1 150 70.0
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 5.9e-59 231.1 150 70.0
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 7.6e-59 230.7 150 70.0
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 7.6e-59 230.7 150 70.0
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 7.6e-59 230.7 152 69.7
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 7.6e-59 230.7 155 69.0
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 7.6e-59 230.7 154 68.2
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 1.0e-58 230.3 146 70.5
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 1.0e-58 230.3 145 71.0
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 1.7e-58 229.6 146 69.9
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 1.7e-58 229.6 146 69.9
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 1.7e-58 229.6 150 70.0
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 2.2e-58 229.2 147 68.7
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 2.2e-58 229.2 146 71.2
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 2.9e-58 228.8 149 69.8
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 2.9e-58 228.8 156 69.9
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 3.8e-58 228.4 135 74.8
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 6.5e-58 227.6 141 73.0
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 8.5e-58 227.3 150 69.3
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 8.5e-58 227.3 151 68.2
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 8.5e-58 227.3 150 68.7
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 1.1e-57 226.9 145 69.0
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 2.3e-55 219.2 146 67.8
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 3.0e-55 218.8 136 71.3
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.9e-55 218.4 182 59.9
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 5.1e-55 218.0 149 65.1
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 5.1e-55 218.0 187 58.3
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 5.1e-55 218.0 182 58.8
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 1.5e-54 216.5 144 71.5
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 3.3e-54 215.3 142 65.5
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 4.3e-54 214.9 133 69.2
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 1.3e-53 213.4 172 59.9
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 4.8e-53 211.5 163 59.5
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 6.9e-52 207.6 132 68.9
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 1.2e-51 206.8 113 85.0
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 5.0e-50 201.4 145 60.0
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 4.8e-45 184.9 106 79.2
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 4.1e-44 181.8 129 61.2
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 1.3e-42 176.8 150 58.7
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.3e-42 176.8 158 59.5
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 3.2e-41 172.2 97 78.4
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 6.7e-39 164.5 131 52.7
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 3.2e-33 145.6 84 77.4
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-23 114.0 83 61.4
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.4e-23 113.6 72 73.6
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 4.2e-17 92.0 159 34.6
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 8.0e-16 87.8 77 55.8
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 2.7e-11 72.8 107 34.6
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 2.6e-06 56.2 31 77.4


User provided reference genes

Program Settings