Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 3.2e-245 851.3 414 100.0
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 2.9e-166 589.0 345 80.0
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 1.9e-165 586.3 345 78.3
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 7.9e-164 580.9 345 78.0
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 7.9e-164 580.9 345 78.3
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 6.7e-163 577.8 345 78.6
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 3.7e-161 572.0 338 77.8
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 4.8e-161 571.6 345 77.1
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 6.3e-161 571.2 345 77.4
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 1.8e-160 569.7 345 76.8
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 1.8e-160 569.7 345 77.7
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 1.8e-160 569.7 345 78.6
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 3.1e-160 568.9 345 78.3
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 3.1e-160 568.9 345 76.5
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 4.1e-160 568.5 339 78.5
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 4.1e-160 568.5 347 77.8
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 9.1e-160 567.4 345 76.2
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 3.5e-159 565.5 345 76.5
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 2.2e-158 562.8 345 75.4
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 5.0e-158 561.6 345 74.5
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 6.5e-158 561.2 345 76.8
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 1.1e-157 560.5 382 70.4
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 4.2e-157 558.5 345 74.8
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 5.5e-157 558.1 338 76.9
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 5.5e-157 558.1 382 69.4
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 1.2e-156 557.0 345 74.8
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 2.7e-156 555.8 345 74.8
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 3.6e-156 555.4 345 75.7
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 6.1e-156 554.7 345 74.8
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 1.0e-155 553.9 345 74.2
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 1.0e-155 553.9 345 74.5
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 1.0e-155 553.9 345 73.9
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 1.4e-155 553.5 345 72.5
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 4.0e-155 552.0 345 74.2
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 5.2e-155 551.6 345 75.1
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 5.2e-155 551.6 345 74.2
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 8.8e-155 550.8 329 78.4
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 1.1e-154 550.4 345 72.8
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 1.1e-154 550.4 345 73.6
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 1.1e-154 550.4 345 74.5
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 2.6e-154 549.3 338 76.0
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 3.3e-154 548.9 345 76.2
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 3.3e-154 548.9 345 72.5
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 7.5e-154 547.7 345 74.5
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 9.7e-154 547.4 345 74.5
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 2.2e-153 546.2 345 74.5
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 2.8e-153 545.8 347 75.5
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 3.7e-153 545.4 337 75.7
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 6.3e-153 544.7 331 77.0
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 3.1e-152 542.3 397 65.5
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 4.1e-152 542.0 345 73.3
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 3.5e-151 538.9 345 73.6
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 5.9e-151 538.1 382 67.3
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 1.0e-150 537.3 345 72.2
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 1.3e-150 537.0 334 75.1
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 2.2e-150 536.2 338 72.5
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 1.1e-149 533.9 345 72.2
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 5.5e-149 531.6 351 68.9
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 5.5e-149 531.6 345 69.3
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 7.2e-149 531.2 358 68.2
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 2.1e-148 529.6 359 70.8
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 3.6e-148 528.9 352 72.4
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 1.0e-147 527.3 345 69.3
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 1.0e-147 527.3 345 71.9
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 4.4e-146 521.9 338 70.4
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 1.3e-145 520.4 338 70.1
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 1.7e-145 520.0 338 70.1
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 2.8e-145 519.2 347 71.2
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 1.8e-144 516.5 338 69.5
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 3.1e-144 515.8 338 69.5
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 3.1e-144 515.8 344 69.2
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 5.4e-144 515.0 338 68.3
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 7.0e-144 514.6 344 69.2
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 9.1e-144 514.2 338 69.5
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 2.7e-143 512.7 344 68.9
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 5.9e-143 511.5 339 69.3
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 3.8e-142 508.8 360 68.1
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 2.5e-141 506.1 331 71.3
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 3.8e-134 482.3 336 68.2
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 6.6e-134 481.5 342 63.7
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 8.0e-132 474.6 295 76.6
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 1.2e-127 460.7 311 65.6
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 1.6e-127 460.3 345 65.8
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 3.5e-127 459.1 291 72.2
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 2.3e-126 456.4 335 66.0
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 8.6e-126 454.5 337 66.5
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.0e-123 447.6 291 73.2
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.5e-122 443.7 283 74.2
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 2.0e-122 443.4 299 72.2
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.0e-122 443.4 293 72.4
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 9.8e-122 441.0 324 65.1
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 4.9e-121 438.7 345 62.9
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.4e-120 436.4 285 73.3
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 7.8e-119 431.4 389 52.7
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 3.3e-117 426.0 290 67.2
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 4.3e-117 425.6 288 68.8
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 4.7e-116 422.2 337 57.9
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 8.3e-113 411.4 345 61.2
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 3.2e-112 409.5 342 55.8
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 2.1e-111 406.8 217 86.6
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 9.5e-109 397.9 255 73.7
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 2.8e-108 396.4 219 82.6
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 5.2e-107 392.1 213 84.5
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 1.3e-102 377.5 214 80.4
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 2.5e-101 373.2 335 51.3
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 2.9e-97 359.8 317 58.7
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 2.3e-86 323.6 236 62.7
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 6.9e-83 312.0 287 53.0
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 3.4e-74 283.1 307 43.3
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 4.8e-68 262.7 344 39.5
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 1.3e-60 238.0 347 37.5
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 1.6e-55 221.1 131 77.9
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 5.7e-53 212.6 145 71.7
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 7.9e-47 192.2 152 58.6
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 9.7e-45 185.3 100 85.0
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-42 178.3 222 45.0
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 2.6e-42 177.2 125 65.6
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 1.4e-30 138.3 122 48.4
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.2e-29 135.2 85 72.9
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 8.6e-25 119.0 101 56.4
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 3.0e-22 110.5 86 61.6
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 3.0e-22 110.5 86 61.6
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 8.8e-22 109.0 59 86.4
Psat1g217120 Pisum sativum HOM05D005198 ORTHO05D006839 7.8e-18 95.9 66 65.2
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.0e-17 95.5 59 76.3
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 1.7e-17 94.7 55 72.7
SGA_v2.0_scaffold130G34334 Striga asiatica HOM05D005198 ORTHO05D006839 5.0e-17 93.2 63 66.7
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 7.3e-16 89.4 66 59.1
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 5.2e-14 83.2 56 71.4
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 1.5e-13 81.6 402 23.4
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 2.0e-13 81.3 409 23.5
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 2.0e-13 81.3 411 21.9
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 2.6e-13 80.9 409 23.2
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 7.5e-13 79.3 365 23.0
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 1.7e-12 78.2 395 22.5
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 1.7e-12 78.2 411 21.7
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 2.2e-12 77.8 396 23.2
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 2.9e-12 77.4 413 22.5
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 3.7e-12 77.0 392 23.2
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 3.7e-12 77.0 389 22.4
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 4.9e-12 76.6 397 22.9
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 6.4e-12 76.3 392 23.2
COL.COLO4_29149 Corchorus olitorius HOM05D005198 ORTHO05D006839 8.3e-12 75.9 202 30.2
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 8.3e-12 75.9 352 23.3
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.1e-11 75.5 413 22.3
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.4e-11 75.1 352 23.3
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 1.4e-11 75.1 409 22.2
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 1.8e-11 74.7 413 22.0
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 1.8e-11 74.7 409 22.2
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 1.8e-11 74.7 409 22.2
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 1.8e-11 74.7 405 22.5
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 5.4e-11 73.2 405 21.7
unitig_0.g1327 Utricularia gibba HOM05D002708 ORTHO05D003516 5.4e-11 73.2 390 22.6
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 7.0e-11 72.8 412 22.3
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 7.0e-11 72.8 393 22.4
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 9.2e-11 72.4 405 21.5
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 9.2e-11 72.4 405 21.5
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 1.2e-10 72.0 358 22.9
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 1.2e-10 72.0 358 22.9
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 2.7e-10 70.9 392 22.4
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 2.7e-10 70.9 392 22.2
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 2.7e-10 70.9 392 22.4
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 3.5e-10 70.5 358 22.6
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 3.5e-10 70.5 358 22.6
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 3.5e-10 70.5 392 22.2
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 5.9e-10 69.7 394 21.3
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 7.8e-10 69.3 357 23.5
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 1.0e-09 68.9 392 21.9
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 1.3e-09 68.6 332 22.9
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.3e-09 68.6 334 22.2
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.3e-09 68.6 334 22.2
TAR375G0643 Trochodendron aralioides HOM05D002708 ORTHO05D003516 1.3e-09 68.6 347 23.1
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.7e-09 68.2 391 22.0
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 3.0e-09 67.4 390 22.6
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 5.0e-09 66.6 333 22.2
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 5.0e-09 66.6 288 24.7
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 8.6e-09 65.9 388 22.9
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 1.1e-08 65.5 333 21.3
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 1.1e-08 65.5 409 21.3
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 1.5e-08 65.1 394 20.6
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 2.5e-08 64.3 387 22.2
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 1.6e-07 61.6 332 22.0
MELO3C023701.2 Cucumis melo HOM05D002708 ORTHO05D003516 2.8e-07 60.8 289 24.2
BraA02t06891Z Brassica rapa HOM05D005198 ORTHO05D040308 4.0e-06 57.0 56 46.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 6.8e-06 56.2 378 22.5


User provided reference genes

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