Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.6e-70 269.2 131 100.0
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.8e-14 82.4 47 85.1
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.1e-13 78.6 47 80.9
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.7e-09 65.9 47 61.7
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.5e-09 65.5 104 41.3
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.6e-09 65.1 47 59.6
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 6.1e-09 64.7 74 47.3
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 7.9e-09 64.3 47 61.7
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.3e-08 63.5 73 49.3
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.8e-08 63.2 45 68.9
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.3e-08 62.8 47 61.7
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 2.3e-08 62.8 47 63.8
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 2.3e-08 62.8 47 61.7
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.3e-08 62.8 47 61.7
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.0e-08 62.4 47 61.7
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 3.9e-08 62.0 72 45.8
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.9e-08 62.0 45 62.2
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 5.1e-08 61.6 47 57.4
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 6.7e-08 61.2 47 57.4
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 6.7e-08 61.2 47 57.4
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 6.7e-08 61.2 47 57.4
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 6.7e-08 61.2 47 57.4
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 6.7e-08 61.2 47 57.4
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 8.7e-08 60.8 52 57.7
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 8.7e-08 60.8 47 57.4
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 8.7e-08 60.8 47 55.3
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.1e-07 60.5 47 59.6
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.1e-07 60.5 47 59.6
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 2.5e-07 59.3 47 61.7
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.5e-07 59.3 47 59.6
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 3.3e-07 58.9 73 49.3
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 3.3e-07 58.9 44 59.1
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 4.3e-07 58.5 47 53.2
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 4.3e-07 58.5 47 53.2
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 4.3e-07 58.5 50 60.0
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 5.7e-07 58.2 47 59.6
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 5.7e-07 58.2 47 59.6
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 5.7e-07 58.2 66 48.5
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 7.4e-07 57.8 47 59.6
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 7.4e-07 57.8 47 59.6
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 7.4e-07 57.8 47 59.6
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 7.4e-07 57.8 47 51.1
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 9.7e-07 57.4 43 62.8
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 9.7e-07 57.4 47 57.4
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 9.7e-07 57.4 47 57.4
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 9.7e-07 57.4 47 57.4
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.3e-06 57.0 47 55.3
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.3e-06 57.0 45 57.8
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.3e-06 57.0 47 55.3
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.6e-06 56.6 47 57.4
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.6e-06 56.6 47 57.4
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.6e-06 56.6 53 47.2
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 1.6e-06 56.6 47 53.2
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.6e-06 56.6 47 55.3
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.6e-06 56.6 48 62.5
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.6e-06 56.6 48 62.5
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 2.2e-06 56.2 47 57.4
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.2e-06 56.2 47 55.3
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.2e-06 56.2 47 55.3
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 2.2e-06 56.2 47 55.3
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.2e-06 56.2 39 64.1
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 2.2e-06 56.2 47 51.1
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 2.2e-06 56.2 45 55.6
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.8e-06 55.8 47 57.4
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 2.8e-06 55.8 47 57.4
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 2.8e-06 55.8 47 57.4
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 2.8e-06 55.8 47 57.4
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.8e-06 55.8 47 53.2
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 2.8e-06 55.8 47 53.2
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.8e-06 55.8 45 57.8
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 2.8e-06 55.8 47 53.2
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 2.8e-06 55.8 43 58.1
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 2.8e-06 55.8 47 57.4
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 3.7e-06 55.5 47 57.4
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 3.7e-06 55.5 47 57.4
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.7e-06 55.5 47 57.4
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 3.7e-06 55.5 35 71.4
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 3.7e-06 55.5 51 51.0
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 4.8e-06 55.1 47 55.3
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 4.8e-06 55.1 47 55.3
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 4.8e-06 55.1 73 45.2
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 6.3e-06 54.7 47 55.3
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 6.3e-06 54.7 47 53.2
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 6.3e-06 54.7 45 55.6
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 8.2e-06 54.3 47 53.2
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 8.2e-06 54.3 46 60.9


User provided reference genes

Program Settings