Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.3e-81 305.1 162 100.0
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 1.9e-28 129.8 102 68.6
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 4.2e-28 128.6 96 69.8
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 7.2e-28 127.9 88 73.9
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 7.2e-28 127.9 88 73.9
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 7.2e-28 127.9 88 73.9
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 7.2e-28 127.9 88 73.9
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-26 123.6 77 80.5
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 8.8e-26 120.9 87 70.1
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 2.6e-25 119.4 76 78.9
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 9.7e-25 117.5 71 80.3
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 3.7e-24 115.5 80 73.8
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.4e-23 113.6 88 68.2
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.4e-23 113.6 88 68.2
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 5.3e-23 111.7 56 94.6
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.2e-22 110.5 71 77.5
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 1.2e-22 110.5 89 67.4
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 1.6e-22 110.2 95 62.1
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 1.6e-22 110.2 67 82.1
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.5e-22 108.6 64 82.8
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.5e-22 108.6 64 82.8
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.5e-22 108.6 64 82.8
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.5e-22 108.6 64 82.8
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.5e-22 108.6 64 82.8
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 1.6e-19 100.1 89 61.8
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 2.7e-19 99.4 79 65.8
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 2.7e-19 99.4 64 76.6
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 1.8e-18 96.7 73 65.8
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 3.0e-18 95.9 46 95.7
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 4.0e-18 95.5 51 90.2
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 3.4e-17 92.4 52 82.7
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 2.8e-16 89.4 66 69.7
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 4.8e-16 88.6 48 85.4
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 4.5e-14 82.0 94 51.1
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 7.7e-14 81.3 54 72.2
TPR.G8529 Trifolium pratense HOM05D000060 ORTHO05D000082 7.7e-14 81.3 51 80.4
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 1.7e-13 80.1 41 92.7
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.8e-13 79.0 50 80.0
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 3.8e-13 79.0 41 90.2
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 5.0e-13 78.6 65 66.2
Medtr7g093213 Medicago truncatula HOM05D000963 ORTHO05D005131 6.5e-13 78.2 43 90.7
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 2.5e-12 76.3 41 90.2
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 2.5e-12 76.3 41 90.2
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.5e-12 76.3 41 90.2
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 4.7e-11 72.0 44 86.4
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 1.0e-10 70.9 55 63.6
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 2.3e-10 69.7 69 56.5
TPR.G39377 Trifolium pratense HOM05D012009 ORTHO05D013759 2.3e-10 69.7 44 97.7
Dinv05368 Davidia involucrata HOM05D001299 ORTHO05D001985 4.0e-10 68.9 45 97.8
Ca_03781_v3 Cicer arietinum L. HOM05D012009 ORTHO05D013759 5.2e-10 68.6 116 50.9
Gorai.001G164700 Gossypium raimondii HOM05D012009 ORTHO05D013759 8.8e-10 67.8 49 89.8
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 8.8e-10 67.8 40 82.5
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 8.8e-10 67.8 41 85.4
arahy.Tifrunner.gnm1.ann1.GXS9UA Arachis hypogaea HOM05D012009 ORTHO05D013759 1.5e-09 67.0 105 51.4
Psat7g093480 Pisum sativum HOM05D012009 ORTHO05D013759 2.0e-09 66.6 44 97.7
ECA234G4679 Erigeron canadensis HOM05D000476 ORTHO05D004793 2.6e-09 66.2 37 86.5
Hma1.2p1_0045F.1_g026530 Hydrangea macrophylla HOM05D000963 ORTHO05D005131 5.7e-09 65.1 41 78.0
Prupe.8G057700 Prunus persica HOM05D012009 ORTHO05D013759 7.5e-09 64.7 44 95.5
arahy.Tifrunner.gnm1.ann1.MH1TZC Arachis hypogaea HOM05D012009 ORTHO05D013759 2.8e-08 62.8 105 41.9
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.8e-08 62.8 44 77.3
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 8.3e-08 61.2 38 84.2
Oeu048363.1 Olea europaea HOM05D000963 ORTHO05D018542 1.1e-07 60.8 90 41.1
arahy.Tifrunner.gnm1.ann1.N76Q1G Arachis hypogaea HOM05D002965 ORTHO05D015988 4.1e-07 58.9 108 39.8
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 7.0e-07 58.2 49 65.3
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 9.2e-07 57.8 49 65.3
Cfa021129 Carpinus fangiana HOM05D000963 ORTHO05D005131 1.6e-06 57.0 70 55.7
Cfa010543 Carpinus fangiana HOM05D000963 ORTHO05D005131 2.0e-06 56.6 36 80.6
Cfa022991 Carpinus fangiana HOM05D015895 ORTHO05D017762 3.5e-06 55.8 44 86.4
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 3.5e-06 55.8 41 65.9
BcaB04g17971 Brassica carinata HOM05D009885 ORTHO05D015988 7.7e-06 54.7 48 60.4


User provided reference genes

Program Settings