Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.4e-221 771.9 405 100.0
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 7.2e-186 654.1 407 82.6
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.5e-175 619.8 407 77.6
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 9.8e-175 617.1 407 78.9
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 3.7e-174 615.1 407 77.1
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.5e-170 603.2 407 76.4
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.5e-170 602.4 407 75.4
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 3.3e-170 602.1 403 77.4
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 9.5e-170 600.5 408 74.5
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 9.5e-170 600.5 408 74.5
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.2e-169 600.1 407 75.7
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.2e-169 600.1 409 76.8
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.8e-169 599.0 407 75.9
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.0e-168 597.0 407 76.4
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.0e-168 597.0 409 76.3
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 2.3e-168 595.9 408 74.8
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.0e-168 595.1 407 74.7
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.0e-168 595.1 407 74.7
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.2e-168 594.7 407 74.4
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 6.8e-168 594.3 407 74.9
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 6.8e-168 594.3 408 74.8
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 6.8e-168 594.3 409 76.3
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.6e-167 592.4 402 76.4
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 7.5e-167 590.9 407 74.0
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 7.5e-167 590.9 402 76.6
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.7e-166 589.7 407 74.0
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.7e-166 589.7 407 75.7
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 2.9e-166 589.0 402 75.1
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 6.4e-166 587.8 407 76.7
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 8.3e-166 587.4 407 74.9
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.4e-165 586.6 407 74.0
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.4e-165 586.6 411 73.2
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.8e-165 586.3 408 75.0
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 2.4e-165 585.9 407 74.0
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 3.2e-165 585.5 407 73.5
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.2e-165 583.9 411 72.5
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.2e-165 583.9 411 72.7
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.2e-164 583.6 402 73.6
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.6e-164 583.2 407 73.7
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.6e-164 583.2 401 75.3
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 2.0e-164 582.8 411 72.3
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.7e-164 582.4 408 74.5
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 3.5e-164 582.0 423 71.4
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 4.6e-164 581.6 407 74.4
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 5.9e-164 581.3 407 75.2
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 7.8e-164 580.9 408 73.5
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.3e-163 580.1 409 73.3
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 5.0e-163 578.2 411 74.5
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 8.6e-163 577.4 402 74.6
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.1e-162 577.0 408 74.5
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.1e-162 577.0 403 75.2
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.5e-162 575.9 411 71.5
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 2.5e-162 575.9 408 72.8
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 2.5e-162 575.9 408 72.8
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.3e-162 575.5 411 72.0
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.6e-162 574.7 411 73.7
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.2e-161 573.5 407 73.5
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.2e-161 573.5 400 73.2
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.6e-161 573.2 405 74.8
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.1e-161 572.8 411 73.5
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 3.6e-161 572.0 400 73.2
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.4e-160 570.1 409 74.1
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.8e-160 569.7 408 73.0
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 5.2e-160 568.2 409 72.1
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 5.2e-160 568.2 402 72.9
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 3.4e-159 565.5 413 73.1
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 3.4e-159 565.5 407 72.5
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.3e-158 563.5 400 71.0
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 4.9e-158 561.6 402 74.9
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.1e-157 560.5 409 73.1
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.1e-157 560.5 391 72.9
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 2.4e-157 559.3 456 68.0
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 3.2e-157 558.9 401 72.3
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.6e-156 556.6 407 71.7
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.0e-156 556.2 406 72.4
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.0e-156 556.2 401 71.3
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 3.5e-156 555.4 442 65.6
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 4.6e-156 555.1 407 72.7
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.3e-155 553.5 407 71.0
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.3e-155 553.5 400 71.0
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 2.3e-155 552.7 408 71.1
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.9e-155 552.0 403 72.7
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 3.9e-155 552.0 402 69.4
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 5.0e-155 551.6 453 64.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 2.5e-154 549.3 402 71.6
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.5e-154 549.3 407 70.0
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.5e-154 549.3 407 70.0
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.6e-154 548.1 405 68.9
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 7.3e-154 547.7 404 72.3
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.8e-153 545.8 407 71.7
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.8e-153 545.8 407 69.5
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 3.6e-153 545.4 446 67.9
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.1e-152 543.9 405 69.6
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.4e-152 543.5 403 70.2
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.8e-152 543.1 413 70.0
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.2e-151 540.4 407 70.5
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.5e-151 540.0 413 69.5
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.0e-151 539.7 406 71.2
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.4e-151 538.5 412 70.6
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 7.5e-151 537.7 407 71.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 9.9e-151 537.3 406 68.2
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.3e-150 537.0 407 70.0
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 6.4e-150 534.6 405 67.2
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.1e-149 533.9 407 70.0
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.4e-149 532.7 433 64.2
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 3.2e-149 532.3 407 66.1
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 2.5e-146 522.7 407 68.8
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.7e-145 518.5 407 68.1
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 3.4e-143 512.3 407 64.1
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 3.4e-143 512.3 408 69.1
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 4.4e-143 511.9 413 68.0
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.7e-142 510.0 407 64.1
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.8e-142 508.8 410 67.3
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 9.2e-141 504.2 407 63.6
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.6e-140 503.4 400 64.8
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 6.0e-140 501.5 404 67.6
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 5.6e-138 495.0 406 63.5
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 2.1e-129 466.5 334 74.6
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 9.0e-128 461.1 366 64.5
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 2.9e-126 456.1 338 70.1
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.2e-125 452.2 520 52.3
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 9.3e-125 451.1 377 63.4
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.9e-117 426.8 297 75.4
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.3e-115 420.6 445 57.8
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 2.8e-113 412.9 407 54.1
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.0e-112 407.9 409 53.8
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.0e-112 407.9 409 53.8
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.5e-111 407.1 435 55.4
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 7.1e-109 398.3 406 57.9
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.4e-93 347.4 401 48.4
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 6.1e-92 342.0 403 54.3
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.5e-87 327.4 409 44.0
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.1e-82 311.2 405 50.1
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.4e-80 304.3 203 78.3
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.8e-67 260.8 425 41.4
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 9.8e-66 255.0 355 44.8
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 4.2e-61 239.6 273 54.9
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.3e-57 228.0 297 44.4
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.9e-54 216.9 168 72.0
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.2e-43 179.5 147 69.4
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 8.3e-33 145.6 100 73.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.0e-30 138.7 414 32.4
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 7.6e-26 122.5 128 52.3
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.2e-25 120.9 105 57.1
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 8.7e-22 109.0 97 59.8
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 8.1e-20 102.4 85 71.8
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.8e-19 101.3 79 74.7
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 2.6e-18 97.4 72 69.4
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 2.6e-18 97.4 446 26.5
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 5.8e-18 96.3 73 63.0
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.9e-17 94.0 384 26.0
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 2.4e-16 90.9 431 26.5
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 5.4e-16 89.7 68 58.8
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 7.8e-15 85.9 60 65.0
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 4.0e-11 73.6 62 71.0
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 3.4e-10 70.5 55 67.3
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 1.3e-06 58.5 86 44.2
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 3.0e-06 57.4 41 73.2


User provided reference genes

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