Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 2.6e-144 515.4 267 100.0
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 5.8e-83 311.6 302 62.3
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 7.1e-73 278.1 291 60.1
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 9.3e-73 277.7 297 59.3
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 1.2e-72 277.3 292 62.0
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 4.3e-70 268.9 281 61.2
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 4.0e-68 262.3 290 57.6
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 2.9e-66 256.1 289 60.2
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 4.9e-66 255.4 292 55.5
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 1.4e-65 253.8 289 56.7
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 2.4e-65 253.1 287 57.5
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 2.4e-65 253.1 287 57.1
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 7.1e-65 251.5 285 57.2
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 3.5e-64 249.2 291 56.7
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 4.6e-64 248.8 290 56.9
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 7.9e-64 248.1 282 55.3
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.3e-63 247.3 281 57.3
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 2.5e-62 243.0 289 55.7
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 7.4e-62 241.5 284 56.0
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 2.8e-61 239.6 296 54.4
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 3.7e-61 239.2 281 55.5
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 6.2e-61 238.4 284 55.6
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 1.8e-60 236.9 290 53.8
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 1.8e-60 236.9 294 54.8
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 5.3e-60 235.3 288 53.8
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 1.5e-59 233.8 300 54.0
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 1.5e-59 233.8 284 56.0
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 3.4e-59 232.6 289 54.7
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 4.5e-59 232.3 284 52.8
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 4.5e-59 232.3 289 55.0
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 1.0e-58 231.1 303 49.8
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 1.7e-58 230.3 285 54.7
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 8.4e-58 228.0 286 54.2
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.4e-57 227.3 289 54.7
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 7.1e-57 224.9 308 51.3
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 7.1e-57 224.9 295 54.9
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 6.0e-56 221.9 288 51.0
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.3e-55 220.7 212 60.8
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 6.7e-55 218.4 286 52.4
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 1.9e-54 216.9 302 50.3
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 3.3e-54 216.1 283 51.6
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 4.3e-54 215.7 280 52.1
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 4.3e-54 215.7 302 50.3
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 1.3e-53 214.2 296 50.0
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 1.6e-53 213.8 281 52.7
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 1.6e-53 213.8 285 52.6
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 2.8e-53 213.0 277 54.2
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.8e-53 213.0 286 52.8
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 3.7e-53 212.6 293 52.6
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 1.1e-52 211.1 291 52.2
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 1.1e-52 211.1 282 50.4
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.4e-52 209.9 286 52.8
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 5.3e-52 208.8 286 52.4
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 5.3e-52 208.8 295 51.2
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 5.3e-52 208.8 272 51.1
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 1.5e-51 207.2 281 51.6
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 1.5e-51 207.2 285 53.0
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 3.4e-51 206.1 286 52.4
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 3.4e-51 206.1 290 52.1
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 1.3e-50 204.1 294 50.0
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 2.2e-50 203.4 204 64.2
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 1.1e-49 201.1 289 51.6
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 7.2e-49 198.4 289 50.9
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 7.2e-49 198.4 289 50.9
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 9.3e-49 198.0 278 50.7
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 6.1e-48 195.3 260 54.2
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 6.1e-48 195.3 254 52.4
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 1.3e-47 194.1 278 48.9
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 3.9e-47 192.6 294 51.4
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 3.3e-46 189.5 247 52.6
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 4.3e-46 189.1 282 48.6
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 5.7e-46 188.7 282 47.2
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 2.2e-45 186.8 275 49.5
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 2.8e-45 186.4 296 47.6
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 1.4e-44 184.1 288 49.0
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 4.1e-44 182.6 293 48.5
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 5.3e-44 182.2 169 62.7
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 6.9e-44 181.8 293 49.8
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 9.0e-44 181.4 293 48.1
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 9.0e-44 181.4 282 45.4
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 4.5e-43 179.1 287 48.8
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 8.5e-42 174.9 286 47.2
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 1.4e-41 174.1 286 47.2
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 3.2e-41 172.9 294 46.3
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 4.2e-41 172.6 286 46.9
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 7.2e-41 171.8 291 45.7
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 9.4e-41 171.4 281 46.3
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 9.4e-41 171.4 286 46.9
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 1.2e-40 171.0 290 45.5
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 2.3e-39 166.8 244 51.6
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 1.5e-38 164.1 281 45.6
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 2.0e-38 163.7 296 44.9
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 9.7e-38 161.4 239 52.3
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 9.7e-38 161.4 323 41.5
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 2.8e-37 159.8 234 51.3
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 2.0e-35 153.7 266 48.5
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 3.8e-34 149.4 268 43.3
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 3.8e-34 149.4 275 45.8
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 8.5e-34 148.3 263 47.1
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 1.1e-33 147.9 163 61.3
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 1.4e-33 147.5 206 51.5
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 1.1e-30 137.9 338 36.4
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 1.8e-28 130.6 252 42.1
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 3.2e-25 119.8 165 52.1
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 4.2e-25 119.4 179 48.0
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 7.2e-25 118.6 236 39.8
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 1.2e-24 117.9 249 42.6
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 2.0e-22 110.5 92 63.0
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 4.4e-22 109.4 234 41.0
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 9.1e-20 101.7 109 66.1
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 3.8e-18 96.3 231 38.1
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 1.8e-15 87.4 85 57.6
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 3.4e-14 83.2 72 62.5
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 9.1e-12 75.1 196 37.2
C02p62500 Brassica napus HOM05D002674 ORTHO05D007700 3.5e-11 73.2 65 60.0
C05p48610 Brassica napus HOM05D002674 ORTHO05D007700 4.5e-11 72.8 63 60.3
C08p25960 Brassica napus HOM05D002674 ORTHO05D007700 4.5e-11 72.8 63 60.3
BolC9t55650H Brassica oleracea HOM05D002674 ORTHO05D007700 1.7e-10 70.9 63 60.3
BcaB07g32361 Brassica carinata HOM05D002674 ORTHO05D007700 5.0e-10 69.3 71 62.0
C09p27860 Brassica napus HOM05D002674 ORTHO05D007700 1.1e-09 68.2 64 57.8
BolC1t01853H Brassica oleracea HOM05D002674 ORTHO05D007700 1.9e-09 67.4 61 59.0
C02p42550 Brassica napus HOM05D000186 ORTHO05D015008 3.2e-09 66.6 42 71.4
BcaB04g18179 Brassica carinata HOM05D002674 ORTHO05D007700 1.6e-08 64.3 43 74.4
C06p13190 Brassica napus HOM05D002674 ORTHO05D015008 2.1e-08 63.9 41 70.7
A08p09760 Brassica napus HOM05D002674 ORTHO05D007700 1.0e-07 61.6 38 73.7
BraA08t32971Z Brassica rapa HOM05D002674 ORTHO05D007700 1.0e-07 61.6 38 73.7
A09p66240 Brassica napus HOM05D002674 ORTHO05D007700 1.4e-07 61.2 37 75.7
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 3.0e-07 60.1 37 75.7


User provided reference genes

Program Settings