Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0003500 Simmondsia chinensis HOM05D007399 ORTHO05D009341 8.1e-106 387.1 198 100.0
Hund05568 Selenicereus undatus HOM05D007399 ORTHO05D009341 9.7e-35 151.0 186 49.5
Ah.08g214480 Amaranthus hybridus HOM05D007399 ORTHO05D009341 3.5e-32 142.5 168 50.0
AUR62001112 Chenopodium quinoa HOM05D007399 ORTHO05D009341 7.7e-32 141.4 171 48.5
Duzib133G1013 Durio zibethinus HOM05D007399 ORTHO05D009341 7.7e-32 141.4 161 49.1
Peaxi162Scf00398g00810 Petunia axillaris HOM05D007399 ORTHO05D009341 2.9e-31 139.4 168 50.6
Nitab4.5_0000045g0320 Nicotiana tabacum HOM05D007399 ORTHO05D009341 6.5e-31 138.3 168 50.6
Nitab4.5_0000345g0070 Nicotiana tabacum HOM05D007399 ORTHO05D009341 4.2e-30 135.6 175 49.7
Cc01_g16850 Coffea canephora HOM05D007399 ORTHO05D009341 5.5e-30 135.2 116 57.8
Dinv19187 Davidia involucrata HOM05D007399 ORTHO05D009341 1.2e-29 134.0 182 46.2
Ciclev10022115m.g Citrus clementina HOM05D007399 ORTHO05D009341 1.6e-29 133.7 189 45.0
Manes.13G046300 Manihot esculenta HOM05D007399 ORTHO05D009341 2.1e-29 133.3 185 48.1
QL09p052198 Quercus lobata HOM05D007399 ORTHO05D009341 4.7e-29 132.1 186 45.7
Nn1g07919 Nelumbo nucifera HOM05D007399 ORTHO05D009341 8.0e-29 131.3 146 51.4
Thecc.01G222700 Theobroma cacao HOM05D007399 ORTHO05D009341 8.0e-29 131.3 200 42.5
Sabra02G0185900 Salix brachista HOM05D007399 ORTHO05D009341 1.4e-28 130.6 153 51.0
QL09p053062 Quercus lobata HOM05D007399 ORTHO05D009341 1.1e-27 127.5 147 49.0
AUR62008936 Chenopodium quinoa HOM05D007399 ORTHO05D009341 1.5e-27 127.1 158 49.4
Oeu037382.1 Olea europaea HOM05D007399 ORTHO05D009341 1.5e-27 127.1 147 49.0
Prupe.8G200700 Prunus persica HOM05D007399 ORTHO05D009341 1.5e-27 127.1 176 47.2
VMungo0331G1622 Vigna mungo HOM05D007399 ORTHO05D009341 1.5e-27 127.1 145 49.0
Haze_24850 Corylus avellana HOM05D007399 ORTHO05D009341 2.0e-27 126.7 185 46.5
Glyma.16G101000 Glycine max HOM05D007399 ORTHO05D009341 2.0e-27 126.7 122 54.9
Potri.002G244400 Populus trichocarpa HOM05D007399 ORTHO05D009341 2.0e-27 126.7 152 48.7
HanXRQChr01g0015211 Helianthus annuus HOM05D007399 ORTHO05D009341 2.6e-27 126.3 162 46.3
Phvul.010G020400 Phaseolus vulgaris HOM05D007399 ORTHO05D009341 3.3e-27 125.9 177 43.5
arahy.Tifrunner.gnm1.ann1.5JJB2W Arachis hypogaea HOM05D007399 ORTHO05D009341 4.4e-27 125.6 176 45.5
Gohir.A11G139200 Gossypium hirsutum HOM05D007399 ORTHO05D009341 5.7e-27 125.2 201 41.3
Oeu037384.1 Olea europaea HOM05D007399 ORTHO05D009341 7.5e-27 124.8 109 58.7
Actinidia09475 Actinidia chinensis HOM05D007399 ORTHO05D009341 9.7e-27 124.4 198 42.4
CAN.G3.2 Capsicum annuum HOM05D007399 ORTHO05D009341 1.7e-26 123.6 174 47.1
Gohir.D11G145400 Gossypium hirsutum HOM05D007399 ORTHO05D009341 1.7e-26 123.6 201 41.3
Gorai.007G155900 Gossypium raimondii HOM05D007399 ORTHO05D009341 1.7e-26 123.6 152 46.1
COL.COLO4_15647 Corchorus olitorius HOM05D007399 ORTHO05D009341 2.2e-26 123.2 171 45.0
ECA248G2789 Erigeron canadensis HOM05D007399 ORTHO05D009341 8.2e-26 121.3 163 47.2
Lsat_1_v5_gn_5_180581 Lactuca sativa HOM05D007399 ORTHO05D009341 8.2e-26 121.3 137 49.6
Rhsim01G0254900 Rhododendron simsii HOM05D007399 ORTHO05D009341 8.2e-26 121.3 137 48.9
Atru.chr6.1505 Acer truncatum HOM05D007399 ORTHO05D009341 1.1e-25 120.9 110 56.4
Cpa.g.sc8.134 Carica papaya HOM05D007399 ORTHO05D009341 1.1e-25 120.9 161 44.7
Lalb_Chr12g0209951 Lupinus albus HOM05D007399 ORTHO05D009341 1.1e-25 120.9 183 45.4
arahy.Tifrunner.gnm1.ann1.YE6SLX Arachis hypogaea HOM05D007399 ORTHO05D009341 1.4e-25 120.6 146 46.6
TAR362G0473 Trochodendron aralioides HOM05D007399 ORTHO05D009341 1.8e-25 120.2 153 47.1
TWI18G0746 Tripterygium wilfordii HOM05D007399 ORTHO05D009341 2.4e-25 119.8 181 42.5
Sopen09g023130 Solanum pennellii HOM05D007399 ORTHO05D009341 4.1e-25 119.0 150 46.7
PGSC0003DMG401023104 Solanum tuberosum HOM05D007399 ORTHO05D009341 4.1e-25 119.0 148 46.6
Thhalv10022223m.g Eutrema salsugineum HOM05D007399 ORTHO05D009341 7.0e-25 118.2 130 51.5
PGR083G1511 Punica granatum HOM05D007399 ORTHO05D009341 1.2e-24 117.5 171 45.0
Lj3g0000647 Lotus japonicus HOM05D007399 ORTHO05D009341 1.6e-24 117.1 146 46.6
Solyc09g059950.3 Solanum lycopersicum HOM05D007399 ORTHO05D009341 1.6e-24 117.1 150 46.0
Cfa002599 Carpinus fangiana HOM05D007399 ORTHO05D009341 4.5e-24 115.5 147 51.0
FvH4_2g18740 Fragaria vesca HOM05D007399 ORTHO05D009341 4.5e-24 115.5 173 42.8
Eucgr.H00781 Eucalyptus grandis HOM05D007399 ORTHO05D009341 5.9e-24 115.2 104 58.7
FAN24G1833 Fragaria x ananassa HOM05D007399 ORTHO05D009341 5.9e-24 115.2 168 42.9
QL09p053453 Quercus lobata HOM05D007399 ORTHO05D009341 5.9e-24 115.2 188 42.6
CiPaw.03G147600 Carya illinoinensis HOM05D007399 ORTHO05D009341 2.2e-23 113.2 128 50.8
GSVIVG01003279001 Vitis vinifera HOM05D007399 ORTHO05D009341 2.2e-23 113.2 167 43.1
Aa31LG5G17710 Aethionema arabicum HOM05D007399 ORTHO05D009341 2.9e-23 112.8 146 46.6
EL10Ac7g17870 Beta vulgaris HOM05D007399 ORTHO05D009341 2.9e-23 112.8 158 47.5
Migut.D02494 Erythranthe guttata HOM05D007399 ORTHO05D009341 2.9e-23 112.8 175 46.3
A05p41060 Brassica napus HOM05D007399 ORTHO05D009341 6.5e-23 111.7 130 49.2
C05p60230 Brassica napus HOM05D007399 ORTHO05D009341 6.5e-23 111.7 130 49.2
RcHm_v2.0_Chr6g0284361 Rosa chinensis HOM05D007399 ORTHO05D009341 6.5e-23 111.7 135 46.7
BcaC05g29843 Brassica carinata HOM05D007399 ORTHO05D009341 8.5e-23 111.3 130 49.2
BolC5t34673H Brassica oleracea HOM05D007399 ORTHO05D009341 8.5e-23 111.3 130 49.2
Carub.0003s0667 Capsella rubella HOM05D007399 ORTHO05D009341 8.5e-23 111.3 129 48.8
CARHR081750 Cardamine hirsuta HOM05D007399 ORTHO05D009341 8.5e-23 111.3 159 42.8
FAN15G3119 Fragaria x ananassa HOM05D007399 ORTHO05D009341 8.5e-23 111.3 173 42.2
FAN27G2185 Fragaria x ananassa HOM05D007399 ORTHO05D009341 1.9e-22 110.2 173 41.6
Lj2A1128G40 Lonicera japonica HOM05D007399 ORTHO05D009341 1.9e-22 110.2 121 50.4
AL3G18400 Arabidopsis lyrata HOM05D007399 ORTHO05D009341 4.2e-22 109.0 108 52.8
BcaC05g29751 Brassica carinata HOM05D007399 ORTHO05D009341 5.5e-22 108.6 172 40.1
BraA05t22833Z Brassica rapa HOM05D007399 ORTHO05D009341 9.4e-22 107.8 162 42.6
Sp3g06090 Schrenkiella parvula HOM05D007399 ORTHO05D009341 9.4e-22 107.8 164 43.3
CDE06G2632 Ceratophyllum demersum HOM05D007399 ORTHO05D009341 1.2e-21 107.5 98 59.2
PSO170G3887 Papaver somniferum HOM05D007399 ORTHO05D009341 1.6e-21 107.1 110 48.2
THA.LOC104802666 Tarenaya hassleriana HOM05D007399 ORTHO05D009341 2.1e-21 106.7 131 47.3
ClCG09G008880 Citrullus lanatus HOM05D007399 ORTHO05D009341 4.7e-21 105.5 148 43.2
TPR.G17137 Trifolium pratense HOM05D007399 ORTHO05D009341 4.7e-21 105.5 181 42.0
AT3G07150 Arabidopsis thaliana HOM05D007399 ORTHO05D009341 6.1e-21 105.1 174 39.7
DCAR_000523 Daucus carota HOM05D007399 ORTHO05D009341 6.1e-21 105.1 173 42.2
Psat4g199960 Pisum sativum HOM05D007399 ORTHO05D009341 1.0e-20 104.4 181 40.9
PSO357G0666 Papaver somniferum HOM05D007399 ORTHO05D009341 1.4e-20 104.0 154 39.6
Medtr8g013040 Medicago truncatula HOM05D007399 ORTHO05D009341 1.8e-20 103.6 175 44.6
CSS0020487 Camellia sinensis var. sinensis HOM05D007399 ORTHO05D009341 2.3e-20 103.2 80 63.8
MD05G1173200 Malus domestica HOM05D007399 ORTHO05D009341 2.3e-20 103.2 182 40.7
SHI28622 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-20 102.8 103 50.5
CsaV3_7G026010 Cucumis sativus L. HOM05D007399 ORTHO05D009341 5.7e-19 98.6 120 49.2
CANSAT01G2134 Cannabis sativa HOM05D007399 ORTHO05D009341 1.7e-18 97.1 142 38.0
CANSAT01G0413 Cannabis sativa HOM05D007399 ORTHO05D009341 2.8e-18 96.3 142 37.3
SalBow6G3187 Salvia bowleyana HOM05D007399 ORTHO05D009341 2.8e-18 96.3 154 40.9
SalBow6G3685 Salvia bowleyana HOM05D007399 ORTHO05D009341 2.8e-18 96.3 154 40.9
CANSAT01G1231 Cannabis sativa HOM05D007399 ORTHO05D009341 3.7e-18 95.9 126 40.5
MELO3C021053.2 Cucumis melo HOM05D007399 ORTHO05D009341 5.4e-17 92.0 148 42.6
CANSAT01G2481 Cannabis sativa HOM05D007399 ORTHO05D009341 7.0e-17 91.7 130 39.2
Sed0009642 Sechium edule HOM05D007399 ORTHO05D009341 1.7e-15 87.0 151 40.4
ATR0609G108 Amborella trichopoda HOM05D007399 ORTHO05D009341 1.6e-13 80.5 127 38.6
Actinidia23717 Actinidia chinensis HOM05D007399 ORTHO05D009341 2.1e-13 80.1 191 34.6
Hund20426 Selenicereus undatus HOM05D007399 ORTHO05D009341 4.7e-13 79.0 174 35.6
Os01g0918400 Oryza sativa ssp. japonica HOM05D007399 ORTHO05D009341 2.3e-12 76.6 81 48.1
SEGI_10803 Sequoiadendron giganteum HOM05D007399 ORTHO05D009341 5.7e-11 72.0 164 30.5
Zm00001eb364650 Zea mays HOM05D007399 ORTHO05D009341 2.8e-10 69.7 85 42.4
HPP92_011779 Vanilla planifolia HOM05D007399 ORTHO05D009341 2.0e-08 63.5 187 28.9


User provided reference genes

Program Settings