Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0003360 Simmondsia chinensis HOM05D007112 ORTHO05D008930 1.3e-122 443.0 211 100.0
AUR62008068 Chenopodium quinoa HOM05D007112 ORTHO05D008930 7.3e-65 251.1 232 56.0
AUR62028645 Chenopodium quinoa HOM05D007112 ORTHO05D008930 6.2e-64 248.1 232 54.7
Hund02806 Selenicereus undatus HOM05D007112 ORTHO05D008930 3.4e-62 242.3 225 52.9
Atru.chr6.3529 Acer truncatum HOM05D007112 ORTHO05D008930 6.7e-58 228.0 226 49.6
CSS0005940 Camellia sinensis var. sinensis HOM05D007112 ORTHO05D008930 1.9e-57 226.5 205 55.1
LjContig00389g0002281 Lotus japonicus HOM05D007112 ORTHO05D008930 3.3e-57 225.7 223 49.8
Hma1.2p1_1043F.1_g251280 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 2.1e-56 223.0 228 49.1
arahy.Tifrunner.gnm1.ann1.T2R7SH Arachis hypogaea HOM05D007112 ORTHO05D008930 8.1e-56 221.1 241 47.3
FAN15G3611 Fragaria x ananassa HOM05D007112 ORTHO05D008930 1.4e-55 220.3 219 52.1
RcHm_v2.0_Chr6g0282211 Rosa chinensis HOM05D007112 ORTHO05D008930 4.0e-55 218.8 216 50.9
Actinidia23803 Actinidia chinensis HOM05D007112 ORTHO05D008930 5.3e-55 218.4 219 53.0
FvH4_2g17490 Fragaria vesca HOM05D007112 ORTHO05D008930 6.9e-55 218.0 218 51.4
Prupe.8G187100 Prunus persica HOM05D007112 ORTHO05D008930 2.6e-54 216.1 225 48.9
VMungo0331G1777 Vigna mungo HOM05D007112 ORTHO05D008930 4.5e-54 215.3 228 46.5
Duzib133G1446 Durio zibethinus HOM05D007112 ORTHO05D008930 5.8e-54 214.9 222 46.8
Phvul.010G036300 Phaseolus vulgaris HOM05D007112 ORTHO05D008930 5.8e-54 214.9 229 46.7
TAR362G0557 Trochodendron aralioides HOM05D007112 ORTHO05D008930 7.6e-54 214.5 233 45.5
Glyma.07G124300 Glycine max HOM05D007112 ORTHO05D008930 3.8e-53 212.2 229 46.3
GSVIVG01001529001 Vitis vinifera HOM05D007112 ORTHO05D008930 4.9e-53 211.8 225 46.7
Medtr8g010140 Medicago truncatula HOM05D007112 ORTHO05D008930 1.1e-52 210.7 230 48.3
Rhsim01G0247600 Rhododendron simsii HOM05D007112 ORTHO05D008930 1.4e-52 210.3 221 52.0
Lalb_Chr07g0194661 Lupinus albus HOM05D007112 ORTHO05D008930 2.5e-52 209.5 229 47.6
MD05G1153700 Malus domestica HOM05D007112 ORTHO05D008930 2.5e-52 209.5 221 49.3
THA.LOC104819012 Tarenaya hassleriana HOM05D007112 ORTHO05D008930 2.5e-52 209.5 236 46.6
Glyma.03G097000 Glycine max HOM05D007112 ORTHO05D008930 5.5e-52 208.4 233 45.9
Thecc.01G207600 Theobroma cacao HOM05D007112 ORTHO05D008930 7.1e-52 208.0 227 45.4
COL.COLO4_34270 Corchorus olitorius HOM05D007112 ORTHO05D008930 1.2e-51 207.2 226 46.9
Gohir.A07G195600 Gossypium hirsutum HOM05D007112 ORTHO05D008930 1.2e-51 207.2 228 45.6
Nitab4.5_0000038g0350 Nicotiana tabacum HOM05D007112 ORTHO05D008930 1.2e-51 207.2 233 45.1
CANSAT01G1474 Cannabis sativa HOM05D007112 ORTHO05D008930 2.7e-51 206.1 237 48.5
Migut.D00774 Erythranthe guttata HOM05D007112 ORTHO05D008930 2.7e-51 206.1 231 47.2
Sabra14G0134200 Salix brachista HOM05D007112 ORTHO05D008930 2.7e-51 206.1 223 47.5
Solyc09g047840.3 Solanum lycopersicum HOM05D007112 ORTHO05D008930 3.5e-51 205.7 233 45.9
TPR.G17379 Trifolium pratense HOM05D007112 ORTHO05D008930 3.5e-51 205.7 227 46.3
CARHR082180 Cardamine hirsuta HOM05D007112 ORTHO05D008930 4.6e-51 205.3 225 46.7
Psat4g208280 Pisum sativum HOM05D007112 ORTHO05D008930 4.6e-51 205.3 215 47.4
Cfa017735 Carpinus fangiana HOM05D007112 ORTHO05D008930 7.9e-51 204.5 226 47.8
Gorai.001G227200 Gossypium raimondii HOM05D007112 ORTHO05D008930 7.9e-51 204.5 228 45.6
Nitab4.5_0010469g0020 Nicotiana tabacum HOM05D007112 ORTHO05D008930 1.0e-50 204.1 233 43.3
PGSC0003DMG400021909 Solanum tuberosum HOM05D007112 ORTHO05D008930 1.0e-50 204.1 221 45.2
Dinv28792 Davidia involucrata HOM05D007112 ORTHO05D008930 2.3e-50 203.0 215 48.4
Lj2A1111T23 Lonicera japonica HOM05D007112 ORTHO05D008930 2.3e-50 203.0 228 45.6
PSO675G4719 Papaver somniferum HOM05D007112 ORTHO05D008930 2.3e-50 203.0 248 44.4
arahy.Tifrunner.gnm1.ann1.X2Q8CL Arachis hypogaea HOM05D007112 ORTHO05D008930 3.0e-50 202.6 217 47.0
Gohir.D07G202200 Gossypium hirsutum HOM05D007112 ORTHO05D008930 3.0e-50 202.6 228 45.6
HanXRQChr08g0231791 Helianthus annuus HOM05D007112 ORTHO05D008930 3.0e-50 202.6 213 50.2
Sopen09g015950 Solanum pennellii HOM05D007112 ORTHO05D008930 5.1e-50 201.8 221 46.6
Aa31LG5G18060 Aethionema arabicum HOM05D007112 ORTHO05D008930 6.7e-50 201.4 234 44.4
Carub.0003s0707 Capsella rubella HOM05D007112 ORTHO05D008930 6.7e-50 201.4 223 45.7
TWI36G0064 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 8.7e-50 201.1 228 45.2
Ca_23159_v3 Cicer arietinum L. HOM05D007112 ORTHO05D008930 1.5e-49 200.3 227 45.4
PSO732G0401 Papaver somniferum HOM05D007112 ORTHO05D008930 2.5e-49 199.5 248 43.5
Cc01_g15870 Coffea canephora HOM05D007112 ORTHO05D008930 3.3e-49 199.1 237 43.9
Ciclev10016325m.g Citrus clementina HOM05D007112 ORTHO05D008930 4.3e-49 198.7 226 44.2
Peaxi162Scf02239g00022 Petunia axillaris HOM05D007112 ORTHO05D008930 4.3e-49 198.7 237 42.6
Oeu013523.1 Olea europaea HOM05D007112 ORTHO05D008930 5.7e-49 198.4 232 44.0
ECA247G2139 Erigeron canadensis HOM05D000092 ORTHO05D008930 1.3e-48 197.2 211 47.4
CsaV3_7G026720 Cucumis sativus L. HOM05D007112 ORTHO05D008930 1.6e-48 196.8 228 44.3
Eucgr.K02360 Eucalyptus grandis HOM05D007112 ORTHO05D008930 2.8e-48 196.1 221 47.1
Thhalv10022158m.g Eutrema salsugineum HOM05D007112 ORTHO05D008930 2.8e-48 196.1 216 46.8
BcaC05g29544 Brassica carinata HOM05D007112 ORTHO05D008930 4.8e-48 195.3 219 46.6
A05p40690 Brassica napus HOM05D007112 ORTHO05D008930 4.8e-48 195.3 219 46.1
Ah.11g050810 Amaranthus hybridus HOM05D007112 ORTHO05D008930 6.2e-48 194.9 227 46.7
BraA05t22800Z Brassica rapa HOM05D007112 ORTHO05D008930 6.2e-48 194.9 216 45.4
Sp3g06430 Schrenkiella parvula HOM05D007112 ORTHO05D008930 6.2e-48 194.9 226 46.5
SHI30551 Sapria himalayana HOM05D007112 ORTHO05D008930 8.2e-48 194.5 207 47.8
FAN24G0137 Fragaria x ananassa HOM05D007112 ORTHO05D008930 1.1e-47 194.1 225 46.7
vmacro14688 Vaccinium macrocarpon HOM05D007112 ORTHO05D008930 1.1e-47 194.1 204 50.0
ClCG09G008370 Citrullus lanatus HOM05D007112 ORTHO05D008930 1.4e-47 193.7 229 42.4
QL05p089159 Quercus lobata HOM05D007112 ORTHO05D008930 4.1e-47 192.2 223 45.3
BolC5t34634H Brassica oleracea HOM05D007112 ORTHO05D008930 5.3e-47 191.8 216 46.8
C05p59800 Brassica napus HOM05D007112 ORTHO05D008930 1.2e-46 190.7 217 46.5
Lsat_1_v5_gn_9_16901 Lactuca sativa HOM05D007112 ORTHO05D008930 1.5e-46 190.3 216 45.4
SalBow3G4154 Salvia bowleyana HOM05D007112 ORTHO05D008930 2.0e-46 189.9 235 43.4
AT3G07525 Arabidopsis thaliana HOM05D007112 ORTHO05D008930 3.4e-46 189.1 227 44.1
MSTRG.18505 Avicennia marina HOM05D007112 ORTHO05D008930 4.5e-46 188.7 234 43.6
Aqoxy5G04050 Aquilegia oxysepala HOM05D007112 ORTHO05D008930 7.6e-46 188.0 221 46.2
ATR0752G208 Amborella trichopoda HOM05D007112 ORTHO05D008930 2.9e-45 186.0 216 44.9
Sed0011312 Sechium edule HOM05D007112 ORTHO05D008930 3.8e-45 185.7 223 42.2
PGR044G1116 Punica granatum HOM05D007112 ORTHO05D008930 1.4e-44 183.7 219 45.7
Manes.13G056200 Manihot esculenta HOM05D007112 ORTHO05D008930 1.9e-44 183.3 127 67.7
CiPaw.14G038400 Carya illinoinensis HOM05D007112 ORTHO05D008930 2.1e-43 179.9 190 46.3
Hma1.2p1_1043F.1_g251290 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 7.9e-43 177.9 129 64.3
Zm00001eb425740 Zea mays HOM05D007112 ORTHO05D008930 1.0e-42 177.6 208 44.7
Nn7g37436 Nelumbo nucifera HOM05D007112 ORTHO05D008930 6.7e-42 174.9 126 63.5
HPP92_001291 Vanilla planifolia HOM05D007112 ORTHO05D008930 6.7e-42 174.9 215 41.9
Os04g0497350 Oryza sativa ssp. japonica HOM05D007112 ORTHO05D008930 2.5e-41 172.9 191 45.0
unitig_60.g25572 Utricularia gibba HOM05D007112 ORTHO05D008930 5.7e-41 171.8 222 42.3
MELO3C021125.2 Cucumis melo HOM05D007112 ORTHO05D008930 1.0e-37 161.0 122 62.3
CDE05G1497 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 1.9e-36 156.8 127 56.7
MBI10_g35388_MAGBIO Magnolia biondii HOM05D007112 ORTHO05D008930 9.4e-36 154.5 252 37.7
CAN.G50.11 Capsicum annuum HOM05D007112 ORTHO05D008930 1.7e-32 143.7 125 54.4
DCAR_018609 Daucus carota HOM05D007112 ORTHO05D008930 5.9e-30 135.2 163 46.0
HanXRQChr03g0082541 Helianthus annuus HOM05D007112 ORTHO05D008930 1.3e-29 134.0 80 75.0
Pp3c26_2050 Physcomitrium patens HOM05D007112 ORTHO05D008930 1.3e-29 134.0 184 38.6
Mapoly0002s0314 Marchantia polymorpha HOM05D007112 ORTHO05D008930 1.9e-28 130.2 170 35.3
AagrBONN_evm.TU.Sc2ySwM_344.2017 Anthoceros agrestis HOM05D007112 ORTHO05D008930 6.1e-27 125.2 185 36.8
Cpa.g.sc8.40 Carica papaya HOM05D007112 ORTHO05D008930 4.5e-22 109.0 136 41.2
Haze_03375 Corylus avellana HOM05D007112 ORTHO05D008930 4.5e-22 109.0 152 41.4
EL10Ac5g10586 Beta vulgaris HOM05D007112 ORTHO05D008930 3.2e-20 102.8 67 67.2
SMO141G0021 Selaginella moellendorffii HOM05D007112 ORTHO05D008930 4.7e-19 99.0 197 33.5
EL10Ac5g10588 Beta vulgaris HOM05D007112 ORTHO05D008930 1.3e-16 90.9 64 65.6
MD10G1148000 Malus domestica HOM05D007112 ORTHO05D008930 3.5e-14 82.8 124 37.9
SGA_v2.0_scaffold29G12307 Striga asiatica HOM05D007112 ORTHO05D008930 4.7e-11 72.4 152 33.6
CDE05G2169 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 1.4e-10 70.9 124 34.7
Nn7g37443 Nelumbo nucifera HOM05D007112 ORTHO05D008930 1.1e-07 61.2 66 37.9
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 5.9e-06 55.5 108 27.8


User provided reference genes

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