Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0003140 Simmondsia chinensis HOM05D005758 ORTHO05D029051 1.1e-92 343.2 170 100.0
RcHm_v2.0_Chr6g0288161 Rosa chinensis HOM05D005758 ORTHO05D007218 1.4e-37 160.2 108 72.2
FAN24G1897 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.5e-36 156.8 108 71.3
Prupe.8G224000 Prunus persica HOM05D005758 ORTHO05D007218 9.8e-36 154.1 107 69.2
THA.LOC104800871 Tarenaya hassleriana HOM05D005758 ORTHO05D007218 9.8e-36 154.1 109 70.6
Duzib133G0949 Durio zibethinus HOM05D005758 ORTHO05D007218 3.7e-35 152.1 109 68.8
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 4.9e-35 151.8 111 67.6
Potri.005G224000 Populus trichocarpa HOM05D005758 ORTHO05D007218 6.4e-35 151.4 107 70.1
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 8.3e-35 151.0 111 67.6
MD10G1184300 Malus domestica HOM05D005758 ORTHO05D007218 8.3e-35 151.0 108 70.4
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.1e-34 150.6 111 66.7
arahy.Tifrunner.gnm1.ann1.N9I7Q3 Arachis hypogaea HOM05D005758 ORTHO05D007218 5.4e-34 148.3 107 68.2
EL10Ac5g10402 Beta vulgaris HOM05D005758 ORTHO05D007218 5.4e-34 148.3 110 66.4
Sabra05G0172800 Salix brachista HOM05D005758 ORTHO05D007218 5.4e-34 148.3 107 70.1
Solyc05g026140.4 Solanum lycopersicum HOM05D005758 ORTHO05D007218 5.4e-34 148.3 107 65.4
Sopen05g022350 Solanum pennellii HOM05D005758 ORTHO05D007218 5.4e-34 148.3 107 65.4
Carub.0004s1247 Capsella rubella HOM05D005758 ORTHO05D007218 7.1e-34 147.9 107 68.2
MELO3C015730.2 Cucumis melo HOM05D005758 ORTHO05D007218 7.1e-34 147.9 107 72.0
Sp4g13680 Schrenkiella parvula HOM05D005758 ORTHO05D007218 9.2e-34 147.5 109 67.0
Aa31LG5G5730 Aethionema arabicum HOM05D005758 ORTHO05D007218 1.2e-33 147.1 109 65.1
AL4G26390 Arabidopsis lyrata HOM05D005758 ORTHO05D007218 1.2e-33 147.1 109 66.1
Ciclev10023734m.g Citrus clementina HOM05D005758 ORTHO05D007218 1.2e-33 147.1 105 68.6
CsaV3_7G027330 Cucumis sativus L. HOM05D005758 ORTHO05D007218 1.2e-33 147.1 107 71.0
AT2G31190 Arabidopsis thaliana HOM05D005758 ORTHO05D007218 1.6e-33 146.7 107 67.3
Thecc.01G258700 Theobroma cacao HOM05D005758 ORTHO05D007218 1.6e-33 146.7 109 66.1
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 2.1e-33 146.4 110 68.2
AUR62024718 Chenopodium quinoa HOM05D005758 ORTHO05D007218 2.1e-33 146.4 110 67.3
Thhalv10016683m.g Eutrema salsugineum HOM05D005758 ORTHO05D007218 2.1e-33 146.4 109 65.1
SHI09784 Sapria himalayana HOM05D000105 ORTHO05D007218 4.6e-33 145.2 103 68.0
MSTRG.21495 Avicennia marina HOM05D005758 ORTHO05D007218 6.0e-33 144.8 108 67.6
BcaB06g28512 Brassica carinata HOM05D005758 ORTHO05D007218 1.3e-32 143.7 110 65.5
CSS0001414 Camellia sinensis var. sinensis HOM05D005758 ORTHO05D007218 1.3e-32 143.7 111 68.5
Eucgr.B01556 Eucalyptus grandis HOM05D005758 ORTHO05D007218 1.3e-32 143.7 116 66.4
Nitab4.5_0000206g0090 Nicotiana tabacum HOM05D005758 ORTHO05D007218 1.3e-32 143.7 98 68.4
Peaxi162Scf00854g00219 Petunia axillaris HOM05D005758 ORTHO05D007218 1.3e-32 143.7 107 68.2
Gohir.D07G219100 Gossypium hirsutum HOM05D005758 ORTHO05D007218 1.7e-32 143.3 112 65.2
arahy.Tifrunner.gnm1.ann1.6W8MXB Arachis hypogaea HOM05D005758 ORTHO05D007218 2.3e-32 142.9 103 68.0
TWI12G1280 Tripterygium wilfordii HOM05D005758 ORTHO05D007218 2.3e-32 142.9 98 73.5
Cc04_g14920 Coffea canephora HOM05D005758 ORTHO05D007218 5.1e-32 141.7 98 70.4
PSO017G5675 Papaver somniferum HOM05D005758 ORTHO05D007218 5.1e-32 141.7 109 67.9
Gorai.001G253600 Gossypium raimondii HOM05D005758 ORTHO05D007218 8.6e-32 141.0 107 63.6
PSO063G6478 Papaver somniferum HOM05D005758 ORTHO05D007218 8.6e-32 141.0 109 67.0
Ah.11g049730 Amaranthus hybridus HOM05D005758 ORTHO05D007218 1.1e-31 140.6 99 68.7
Gohir.A07G213000 Gossypium hirsutum HOM05D005758 ORTHO05D007218 1.5e-31 140.2 110 64.5
BcaB06g28429 Brassica carinata HOM05D005758 ORTHO05D007218 1.9e-31 139.8 110 63.6
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.9e-31 139.8 103 63.1
DCAR_012547 Daucus carota HOM05D005758 ORTHO05D007218 2.5e-31 139.4 97 69.1
HanXRQChr09g0254391 Helianthus annuus HOM05D005758 ORTHO05D007218 2.5e-31 139.4 109 65.1
Manes.12G032100 Manihot esculenta HOM05D005758 ORTHO05D007218 2.5e-31 139.4 107 64.5
Hund09599 Selenicereus undatus HOM05D005758 ORTHO05D007218 2.5e-31 139.4 98 72.4
Atru.chr5.1673 Acer truncatum HOM05D005758 ORTHO05D007218 3.3e-31 139.0 107 64.5
A04p24020 Brassica napus HOM05D005758 ORTHO05D007218 4.3e-31 138.7 89 74.2
C04p60690 Brassica napus HOM05D005758 ORTHO05D007218 4.3e-31 138.7 89 74.2
BraA04t17923Z Brassica rapa HOM05D005758 ORTHO05D007218 4.3e-31 138.7 89 74.2
Lalb_Chr02g0152411 Lupinus albus HOM05D005758 ORTHO05D007218 4.3e-31 138.7 108 64.8
SGA_v2.0_scaffold1G00616 Striga asiatica HOM05D005758 ORTHO05D007218 9.5e-31 137.5 107 65.4
BolC4t27558H Brassica oleracea HOM05D005758 ORTHO05D007218 1.2e-30 137.1 89 73.0
ClCG09G007800 Citrullus lanatus HOM05D005758 ORTHO05D007218 1.2e-30 137.1 97 71.1
Phvul.007G193000 Phaseolus vulgaris HOM05D005758 ORTHO05D007218 1.6e-30 136.7 108 65.7
VMungo0720G1063 Vigna mungo HOM05D005758 ORTHO05D007218 1.6e-30 136.7 107 63.6
Duzib138G0621 Durio zibethinus HOM05D005758 ORTHO05D007218 2.1e-30 136.3 109 62.4
CANSAT35G0929 Cannabis sativa HOM05D005758 ORTHO05D007218 2.8e-30 136.0 98 70.4
CiPaw.13G172300 Carya illinoinensis HOM05D005758 ORTHO05D007218 2.8e-30 136.0 107 61.7
Sed0010920 Sechium edule HOM05D005758 ORTHO05D007218 2.8e-30 136.0 107 67.3
Glyma.03G163000 Glycine max HOM05D005758 ORTHO05D007218 4.7e-30 135.2 94 68.1
CAN.G184.8 Capsicum annuum HOM05D005758 ORTHO05D007218 6.2e-30 134.8 97 66.0
Cfa002421 Carpinus fangiana HOM05D005758 ORTHO05D007218 6.2e-30 134.8 98 68.4
Glyma.13G123400 Glycine max HOM05D005758 ORTHO05D007218 6.2e-30 134.8 104 65.4
Cpa.g.sc50.22 Carica papaya HOM05D005758 ORTHO05D007218 8.1e-30 134.4 87 72.4
Migut.D00424 Erythranthe guttata HOM05D005758 ORTHO05D007218 8.1e-30 134.4 84 75.0
CDE03G0270 Ceratophyllum demersum HOM05D005758 ORTHO05D007218 1.1e-29 134.0 106 63.2
Lj5g0021558 Lotus japonicus HOM05D005758 ORTHO05D007218 2.3e-29 132.9 107 62.6
QL09p049090 Quercus lobata HOM05D005758 ORTHO05D007218 3.1e-29 132.5 103 67.0
Rhsim13G0034500 Rhododendron simsii HOM05D005758 ORTHO05D007218 3.1e-29 132.5 111 63.1
Aqoxy2G03640 Aquilegia oxysepala HOM05D005758 ORTHO05D007218 4.0e-29 132.1 97 68.0
MD05G1197700 Malus domestica HOM05D005758 ORTHO05D007218 5.2e-29 131.7 108 63.9
GSVIVG01028326001 Vitis vinifera HOM05D005758 ORTHO05D007218 8.9e-29 131.0 96 68.8
PGR004G1596 Punica granatum HOM05D005758 ORTHO05D007218 1.2e-28 130.6 107 60.7
Glyma.19G164500 Glycine max HOM05D005758 ORTHO05D007218 1.5e-28 130.2 90 67.8
HanXRQChr04g0112661 Helianthus annuus HOM05D005758 ORTHO05D007218 2.6e-28 129.4 84 71.4
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 3.4e-28 129.0 85 72.9
TAR365G0290 Trochodendron aralioides HOM05D005758 ORTHO05D007218 3.4e-28 129.0 98 65.3
ECA236G3842 Erigeron canadensis HOM05D005758 ORTHO05D007218 4.4e-28 128.6 94 64.9
Phvul.001G160800 Phaseolus vulgaris HOM05D005758 ORTHO05D007218 4.4e-28 128.6 94 66.0
vmacro02660 Vaccinium macrocarpon HOM05D005758 ORTHO05D007218 5.8e-28 128.3 109 64.2
HPP92_026239 Vanilla planifolia HOM05D005758 ORTHO05D007218 7.6e-28 127.9 104 61.5
Lsat_1_v5_gn_8_93000 Lactuca sativa HOM05D005758 ORTHO05D007218 9.9e-28 127.5 84 71.4
MBI07_g30496_MAGBIO Magnolia biondii HOM05D005758 ORTHO05D007218 1.3e-27 127.1 97 64.9
TAR636G1025 Trochodendron aralioides HOM05D005758 ORTHO05D007218 1.7e-27 126.7 107 61.7
Psat3g057680 Pisum sativum HOM05D005758 ORTHO05D007218 3.8e-27 125.6 90 65.6
QL09p038696 Quercus lobata HOM05D005758 ORTHO05D007218 3.8e-27 125.6 102 65.7
Medtr7g096920 Medicago truncatula HOM05D005758 ORTHO05D007218 6.4e-27 124.8 90 66.7
Nn3g19650 Nelumbo nucifera HOM05D005758 ORTHO05D007218 6.4e-27 124.8 111 58.6
TPR.G28632 Trifolium pratense HOM05D005758 ORTHO05D007218 1.1e-26 124.0 85 68.2
Ca_08672_v3 Cicer arietinum L. HOM05D005758 ORTHO05D007218 1.9e-26 123.2 90 64.4
VMungo1383G3618 Vigna mungo HOM05D005758 ORTHO05D007218 1.9e-26 123.2 105 60.0
Lj1g0005369 Lotus japonicus HOM05D005758 ORTHO05D007218 4.1e-26 122.1 85 67.1
Lsat_1_v5_gn_5_183400 Lactuca sativa HOM05D005758 ORTHO05D007218 7.1e-26 121.3 109 57.8
ECA248G1569 Erigeron canadensis HOM05D005758 ORTHO05D007218 1.6e-25 120.2 111 60.4
ATR0736G118 Amborella trichopoda HOM05D005758 ORTHO05D007218 6.0e-25 118.2 105 59.0
Zm00001eb077710 Zea mays HOM05D005758 ORTHO05D007218 6.6e-24 114.8 111 52.3
Zm00001eb077720 Zea mays HOM05D005758 ORTHO05D007218 3.3e-23 112.5 111 51.4
Os04g0517300 Oryza sativa ssp. japonica HOM05D005758 ORTHO05D007218 7.3e-23 111.3 107 53.3
Lj1A66G58 Lonicera japonica HOM05D005758 ORTHO05D007218 5.2e-21 105.1 61 82.0
Lsat_1_v5_gn_5_183361 Lactuca sativa HOM05D005758 ORTHO05D007218 2.6e-20 102.8 113 50.4
SEGI_10356 Sequoiadendron giganteum HOM05D005758 ORTHO05D007218 3.2e-18 95.9 64 71.9
MBI10_g29590_MAGBIO Magnolia biondii HOM05D005758 ORTHO05D007218 9.3e-18 94.4 59 74.6
Dinv34621 Davidia involucrata HOM05D005758 ORTHO05D029051 6.0e-17 91.7 89 53.9
AagrBONN_evm.TU.Sc2ySwM_344.1590 Anthoceros agrestis HOM05D006894 ORTHO05D007218 2.3e-16 89.7 112 42.0
SMO364G0160 Selaginella moellendorffii HOM05D005758 ORTHO05D007218 2.5e-15 86.3 82 50.0
Cc06_g16080 Coffea canephora HOM05D005758 ORTHO05D029051 2.8e-14 82.8 71 62.0
Cc05_g06590 Coffea canephora HOM05D005758 ORTHO05D029051 3.6e-14 82.4 103 48.5
Pp3c16_18490 Physcomitrium patens HOM05D005758 ORTHO05D007218 4.8e-14 82.0 107 45.8
unitig_8.g3733 Utricularia gibba HOM05D005758 ORTHO05D007218 6.2e-14 81.6 69 58.0
Mapoly0015s0205 Marchantia polymorpha HOM05D005758 ORTHO05D007218 5.3e-13 78.6 84 51.2
Nitab4.5_0001587g0020 Nicotiana tabacum HOM05D005758 ORTHO05D007218 4.3e-07 58.9 55 43.6
CBR_g49568 Chara braunii HOM05D005758 ORTHO05D007218 6.2e-06 55.1 87 34.5


User provided reference genes

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