Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 0.0e+00 1743.0 890 100.0
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.2e-311 1073.2 908 63.0
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.3e-301 1039.6 899 62.5
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.9e-300 1035.8 930 60.5
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.1e-290 1003.4 908 58.7
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.4e-290 1003.0 928 57.5
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 5.3e-290 1001.1 918 58.6
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.7e-288 996.1 906 59.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 6.1e-286 987.6 900 57.9
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 3.0e-285 985.3 918 58.6
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 1.1e-284 983.4 913 58.7
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 3.3e-284 981.9 928 57.7
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 7.4e-284 980.7 900 58.1
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 2.8e-283 978.8 903 58.5
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 3.7e-283 978.4 912 58.3
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 6.3e-283 977.6 903 57.7
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.8e-282 976.1 925 57.3
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.8e-282 976.1 933 56.1
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 4.5e-281 971.5 922 57.5
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 5.9e-281 971.1 924 57.6
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.3e-280 969.9 921 57.0
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 3.8e-280 968.4 909 57.5
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.9e-279 966.1 926 56.5
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 2.7e-278 962.2 909 58.2
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 4.6e-278 961.4 915 56.7
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.0e-277 960.3 920 57.2
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 8.8e-277 957.2 911 56.0
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.5e-273 946.4 805 61.7
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 6.5e-272 941.0 1146 48.0
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.2e-271 938.7 925 56.0
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 3.2e-271 938.7 932 55.7
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 6.7e-269 931.0 909 55.7
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.0e-268 929.5 904 56.1
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 4.1e-266 921.8 930 55.4
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 7.0e-266 921.0 923 55.6
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 1.1e-263 913.7 910 53.8
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 5.5e-263 911.4 910 54.1
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 9.4e-263 910.6 910 53.7
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 1.2e-262 910.2 975 52.2
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 2.7e-262 909.1 931 53.6
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.6e-262 908.7 921 55.7
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 8.0e-262 907.5 897 56.1
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 1.4e-261 906.7 921 55.8
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 2.0e-260 902.9 928 53.8
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 2.6e-260 902.5 906 55.8
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 7.0e-258 894.4 909 54.5
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 4.5e-257 891.7 920 54.0
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 3.8e-256 888.6 912 54.3
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 1.4e-253 880.2 910 54.1
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 4.0e-253 878.6 906 54.1
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 4.0e-253 878.6 915 53.3
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.7e-251 873.2 921 54.3
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 7.0e-250 867.8 942 52.5
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.7e-248 863.2 718 62.7
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 1.5e-247 860.1 888 55.0
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.9e-247 859.8 927 52.4
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 2.3e-245 852.8 921 53.0
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 6.8e-245 851.3 921 53.1
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 5.7e-244 848.2 750 60.1
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 2.8e-243 845.9 886 52.1
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 2.4e-242 842.8 920 51.8
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 5.4e-242 841.6 909 51.8
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 9.2e-242 840.9 938 48.9
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.2e-236 823.9 906 51.3
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 1.8e-234 816.6 685 62.9
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 4.1e-234 815.5 878 53.1
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 7.0e-234 814.7 919 50.3
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.0e-232 810.8 921 50.7
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 1.3e-232 810.4 869 54.2
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 3.3e-231 805.8 896 51.9
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.2e-230 803.9 894 51.5
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.7e-230 802.0 906 49.9
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 8.3e-227 791.2 925 49.7
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 4.1e-226 788.9 904 49.8
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 4.1e-226 788.9 917 49.7
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 2.7e-225 786.2 924 50.5
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 7.8e-225 784.6 893 50.6
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.0e-224 784.3 887 50.4
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 8.6e-224 781.2 911 49.9
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 2.1e-222 776.5 913 49.4
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 2.3e-221 773.1 1027 46.1
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 1.3e-219 767.3 919 49.0
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 3.5e-217 759.2 701 58.5
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.7e-216 756.9 729 56.2
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 2.0e-212 743.4 889 47.5
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 3.4e-212 742.7 941 47.5
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 3.5e-209 732.6 909 47.3
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.3e-203 714.1 899 46.3
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 3.0e-200 703.0 494 70.9
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 5.6e-199 698.7 789 49.7
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.3e-191 672.9 536 65.3
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 5.6e-191 672.2 899 46.8
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 7.6e-188 661.8 667 54.1
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.6e-185 654.1 844 46.1
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 8.7e-184 648.3 464 70.0
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 3.7e-182 642.9 928 42.5
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.4e-181 640.2 885 45.6
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 2.0e-180 637.1 646 55.3
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 5.1e-176 622.5 902 43.1
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.1e-169 599.0 443 67.9
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 1.0e-147 528.5 411 65.5
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 5.3e-141 506.1 916 38.2
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 8.5e-139 498.8 970 35.4
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.7e-137 493.8 518 51.9
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 1.9e-122 444.5 473 53.5
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.5e-119 434.9 820 35.0
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.5e-114 417.5 460 50.9
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.4e-110 402.9 540 44.8
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.2e-109 399.1 222 85.1
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.2e-109 399.1 222 85.1
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 1.4e-104 385.2 477 48.8
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 2.3e-104 384.4 351 58.1
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.7e-102 378.3 396 53.8
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.7e-102 378.3 318 61.9
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-101 375.6 255 72.5
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 2.3e-99 367.9 484 42.8
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 5.6e-98 363.2 468 46.8
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 5.1e-91 340.1 1008 28.7
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-89 334.7 280 64.3
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 4.0e-80 303.9 316 53.5
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 9.9e-79 299.3 528 36.0
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.3e-78 298.9 300 53.3
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-75 288.9 421 43.5
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.8e-75 288.5 477 41.7
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.7e-68 264.6 431 38.7
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.4e-64 251.5 248 56.0
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 6.9e-64 250.0 519 33.3
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-63 248.8 392 40.6
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-63 248.4 600 31.3
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.8e-56 225.3 358 39.7
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 4.1e-56 224.2 331 41.7
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.9e-55 220.3 220 52.7
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.2e-54 218.4 248 49.6
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 3.7e-49 201.1 561 27.3
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.7e-44 184.1 172 52.3
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 8.8e-43 179.9 156 62.2
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 8.8e-43 179.9 156 62.2
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.0e-40 170.2 137 56.2
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.2e-38 165.2 106 76.4
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.0e-30 137.5 244 38.9
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.8e-27 129.0 167 46.1
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.4e-24 118.6 196 37.8
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 4.1e-24 117.9 78 76.9
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 3.8e-22 111.3 137 46.7
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-19 102.8 169 40.2
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 4.0e-19 101.3 169 39.6
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-17 96.3 155 39.4
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.3e-17 96.3 76 59.2
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 2.2e-17 95.5 613 22.0
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 3.1e-16 91.7 195 38.5
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 5.9e-15 87.4 79 53.2
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 5.5e-13 80.9 78 47.4
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.5e-10 72.8 45 73.3
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 9.8e-10 70.1 127 35.4
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.7e-09 69.3 203 30.5
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.7e-09 68.2 137 34.3
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 1.4e-08 66.2 61 52.5
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 1.8e-08 65.9 164 34.1


User provided reference genes

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