Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-98 362.8 171 100.0
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 2.1e-17 93.2 153 39.9
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 2.3e-16 89.7 146 39.7
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 1.5e-15 87.0 149 38.9
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.3e-15 85.5 144 35.4
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.3e-15 85.5 144 35.4
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 7.4e-15 84.7 142 34.5
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 7.4e-15 84.7 142 34.5
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 9.6e-15 84.3 151 35.8
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.6e-14 83.6 143 36.4
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.1e-14 83.2 143 36.4
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.1e-14 83.2 142 33.8
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.7e-14 82.4 143 35.7
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 6.2e-14 81.6 144 34.0
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.4e-13 80.5 146 35.6
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 3.1e-13 79.3 145 37.9
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.2e-12 77.4 144 35.4
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.2e-12 77.4 145 31.7
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-12 77.4 145 36.6
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 2.6e-12 76.3 164 33.5
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.5e-12 75.5 86 46.5
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 5.0e-11 72.0 146 31.5
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.5e-11 71.6 146 34.9
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 8.4e-11 71.2 132 33.3
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 1.1e-10 70.9 149 32.2
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 5.5e-10 68.6 167 29.9
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 5.5e-10 68.6 156 33.3
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.3e-10 67.8 167 30.5
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 9.3e-10 67.8 143 30.1
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 9.3e-10 67.8 146 31.5
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-09 67.4 120 39.2
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.2e-09 67.4 130 34.6
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.2e-09 67.4 130 34.6
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.1e-09 66.6 147 29.3
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 3.5e-09 65.9 142 32.4
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 3.5e-09 65.9 132 34.8
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.6e-09 65.5 146 28.1
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 4.6e-09 65.5 148 29.7
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.1e-09 65.1 148 31.1
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.0e-08 64.3 167 29.9
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.0e-08 64.3 133 36.1
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 1.3e-08 63.9 130 30.8
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.8e-08 63.5 137 28.5
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.8e-08 63.5 170 31.2
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-08 63.5 148 30.4
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.7e-08 61.6 140 30.0
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 6.7e-08 61.6 81 42.0
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 6.7e-08 61.6 81 42.0
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-07 60.8 88 38.6
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-07 60.8 88 38.6
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.5e-07 60.5 162 31.5
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.5e-07 60.5 162 32.1
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.5e-07 60.5 144 30.6
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 1.5e-07 60.5 161 31.1
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-07 60.1 81 42.0
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-07 60.1 81 42.0
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.3e-07 59.3 89 39.3
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 4.3e-07 58.9 134 26.9
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 4.3e-07 58.9 134 26.9
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.3e-06 57.4 121 32.2
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 1.3e-06 57.4 146 27.4
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-06 57.0 134 28.4
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.8e-06 56.2 89 38.2
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.8e-06 55.5 123 30.1
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.3e-06 55.1 141 29.8
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 6.3e-06 55.1 81 38.3


User provided reference genes

Program Settings