Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.0e-290 1001.1 500 100.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 3.9e-189 665.2 478 67.6
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.8e-187 659.1 506 66.4
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.7e-187 658.3 473 68.5
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 6.2e-187 657.9 473 68.1
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.1e-186 657.1 473 68.7
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.2e-186 654.8 473 67.4
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.2e-185 653.7 473 68.5
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 3.4e-185 652.1 477 67.9
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 3.4e-185 652.1 470 68.7
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 5.8e-185 651.4 482 67.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 5.8e-185 651.4 478 66.7
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 7.5e-185 651.0 473 67.0
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.7e-184 649.8 506 66.2
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 6.4e-184 647.9 508 64.2
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 8.3e-184 647.5 478 66.5
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 8.3e-184 647.5 470 67.2
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-183 646.7 478 66.3
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 2.4e-183 646.0 511 63.4
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 4.1e-183 645.2 481 66.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 4.1e-183 645.2 508 63.2
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 7.1e-183 644.4 478 66.3
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 9.2e-183 644.0 472 65.7
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.2e-182 643.7 494 66.0
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 2.1e-182 642.9 506 64.8
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 7.8e-182 641.0 473 65.3
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 6.6e-181 637.9 478 66.1
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 8.6e-181 637.5 478 65.9
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.5e-180 636.7 473 65.3
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.9e-180 636.3 496 64.1
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 3.3e-180 635.6 507 64.5
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-180 635.6 486 65.2
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 3.3e-180 635.6 472 65.0
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 4.3e-180 635.2 504 62.7
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 5.6e-180 634.8 473 64.5
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 7.3e-180 634.4 507 64.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 9.5e-180 634.0 479 66.8
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-179 633.6 506 64.6
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.6e-179 633.3 507 64.7
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.6e-179 633.3 478 66.3
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.1e-178 630.6 485 64.7
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.8e-178 627.9 506 63.8
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 2.6e-177 625.9 506 63.2
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 4.4e-177 625.2 531 62.0
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 2.9e-176 622.5 542 60.0
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 4.9e-176 621.7 469 65.5
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 6.4e-176 621.3 511 61.8
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 8.4e-176 620.9 455 67.0
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.9e-175 619.8 475 65.1
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 3.2e-175 619.0 506 63.2
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 7.1e-175 617.8 496 64.1
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 9.2e-175 617.5 494 63.0
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 9.2e-175 617.5 494 63.6
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.7e-174 615.9 467 65.1
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 4.6e-174 615.1 472 64.6
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.3e-173 613.6 485 63.3
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.7e-173 613.2 470 64.0
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.7e-173 613.2 470 64.0
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.9e-173 612.1 482 63.7
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.1e-172 610.5 479 64.7
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.3e-172 609.0 571 56.7
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 7.3e-172 607.8 507 61.9
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 7.3e-172 607.8 463 65.2
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.6e-171 606.7 458 66.6
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.6e-171 606.7 458 66.6
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 2.1e-171 606.3 509 61.9
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 2.1e-171 606.3 500 62.2
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 3.6e-171 605.5 512 61.5
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 4.7e-171 605.1 509 61.5
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 6.2e-171 604.7 500 62.2
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 6.2e-171 604.7 490 63.9
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 8.1e-171 604.4 459 66.9
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 8.1e-171 604.4 475 62.9
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.1e-170 604.0 500 62.0
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 2.4e-170 602.8 469 63.1
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 5.3e-170 601.7 555 56.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.5e-169 600.1 495 62.0
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.0e-169 599.7 456 64.9
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 2.6e-169 599.4 434 66.8
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 3.4e-169 599.0 447 66.2
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 7.6e-169 597.8 475 61.9
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 9.9e-169 597.4 475 62.1
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.3e-168 597.0 459 65.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.9e-168 595.9 497 61.0
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.8e-168 595.5 480 62.1
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 4.9e-168 595.1 522 58.2
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 9.3e-167 590.9 468 62.2
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.6e-166 590.1 456 63.8
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 6.0e-166 588.2 456 63.6
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.3e-165 587.0 514 58.6
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.4e-162 577.0 544 56.6
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-162 577.0 435 66.0
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.8e-162 576.6 460 63.0
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 5.3e-162 575.1 502 58.6
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 9.0e-162 574.3 496 60.5
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-158 563.5 535 55.1
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.0e-157 560.8 490 59.2
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 3.3e-156 555.8 488 58.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 2.1e-155 553.1 429 63.4
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.4e-154 550.4 445 61.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.5e-151 539.7 432 63.7
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.5e-148 529.6 447 60.2
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.2e-142 510.8 458 55.7
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.4e-138 496.5 472 53.6
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.9e-136 489.6 355 68.7
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-132 477.6 367 65.9
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.0e-129 466.8 411 59.6
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.3e-128 464.2 494 51.6
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.8e-128 462.6 381 62.5
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 2.6e-121 439.9 384 59.9
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 8.5e-120 434.9 436 54.6
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 4.5e-113 412.5 477 46.8
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 9.4e-111 404.8 447 49.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.2e-110 404.4 320 61.9
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 3.4e-108 396.4 432 49.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.7e-102 376.7 499 45.3
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 8.6e-96 355.1 387 52.2
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.7e-91 339.7 287 59.9
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-83 314.3 323 54.5
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 4.9e-75 286.2 457 38.3
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 4.3e-71 273.1 402 42.8
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.9e-63 247.7 472 37.1
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.3e-63 246.9 459 36.2
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 2.9e-59 233.8 211 56.9
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 8.7e-56 222.2 358 35.8
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.2e-52 211.8 196 56.6
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.7e-48 198.0 466 33.0
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.1e-45 187.2 156 62.8
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 3.1e-37 160.6 246 39.0
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.3e-35 155.2 210 42.9
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.3e-31 140.6 100 67.0
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-26 125.2 92 67.4
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.3e-24 118.6 337 27.3
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 7.4e-23 112.8 131 46.6
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.3e-14 85.5 112 47.3
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 6.3e-14 83.2 65 63.1
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 8.5e-11 72.8 44 68.2
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 5.5e-10 70.1 47 76.6
Gohir.D11G174850 Gossypium hirsutum HOM05D000686 ORTHO05D000512 3.9e-08 63.9 262 26.0
Gorai.007G187400 Gossypium raimondii HOM05D000686 ORTHO05D000512 6.7e-08 63.2 215 26.5
Gorai.013G139000 Gossypium raimondii HOM05D000686 ORTHO05D000512 6.7e-08 63.2 380 23.2
Thecc.04G053600 Theobroma cacao HOM05D000686 ORTHO05D000512 1.1e-07 62.4 274 26.3
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 2.0e-07 61.6 67 53.7
Gohir.A11G168600 Gossypium hirsutum HOM05D000686 ORTHO05D000512 2.6e-07 61.2 213 27.2
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 9.7e-07 59.3 429 21.4
Gohir.A13G122300 Gossypium hirsutum HOM05D000686 ORTHO05D000512 2.2e-06 58.2 407 21.9
TPR.G31435 Trifolium pratense HOM05D000686 ORTHO05D000512 2.2e-06 58.2 393 21.6
Lj2g0021300 Lotus japonicus HOM05D000686 ORTHO05D000512 4.8e-06 57.0 399 21.8


User provided reference genes

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