Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 3.6e-161 571.6 310 100.0
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 6.1e-100 368.2 303 70.3
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 2.5e-98 362.8 308 65.9
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 2.2e-97 359.8 305 67.5
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 2.8e-97 359.4 308 67.5
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 8.2e-97 357.8 267 74.2
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 1.8e-96 356.7 267 74.2
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 1.8e-96 356.7 267 74.2
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 2.6e-95 352.8 308 63.6
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 5.9e-95 351.7 308 66.9
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 1.7e-94 350.1 295 68.5
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 3.8e-94 349.0 304 66.8
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 3.8e-94 349.0 268 70.1
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 8.5e-94 347.8 301 66.4
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.9e-93 346.7 300 64.3
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 2.5e-93 346.3 258 70.9
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 2.5e-93 346.3 258 72.1
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 4.2e-93 345.5 299 64.9
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 5.5e-93 345.1 309 61.8
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 9.4e-93 344.4 300 65.0
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 1.6e-92 343.6 310 64.2
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 2.7e-92 342.8 258 70.9
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 4.7e-92 342.0 296 64.2
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 4.7e-92 342.0 299 65.2
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 1.4e-91 340.5 300 64.0
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 1.4e-91 340.5 315 63.5
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 5.1e-91 338.6 289 65.1
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 5.1e-91 338.6 256 72.3
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 8.8e-91 337.8 303 63.4
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 1.1e-90 337.4 278 67.3
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 1.5e-90 337.0 300 64.0
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 1.5e-90 337.0 302 63.9
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 2.6e-90 336.3 309 63.4
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 4.4e-90 335.5 279 66.3
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 5.7e-90 335.1 292 64.7
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 1.7e-89 333.6 295 64.1
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 1.7e-89 333.6 303 62.4
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 2.8e-89 332.8 303 62.7
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 4.8e-89 332.0 295 63.7
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 8.2e-89 331.3 303 63.7
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 8.2e-89 331.3 303 63.7
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 1.1e-88 330.9 303 63.7
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 4.1e-88 328.9 304 62.8
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.2e-87 327.4 229 75.1
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 1.5e-87 327.0 261 65.9
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 3.4e-87 325.9 305 63.6
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 3.4e-87 325.9 260 66.9
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 4.5e-87 325.5 305 63.0
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 4.5e-87 325.5 302 62.9
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 5.9e-87 325.1 290 61.7
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 1.0e-86 324.3 301 60.8
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 1.3e-86 323.9 276 64.9
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 1.3e-86 323.9 303 62.4
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 2.2e-86 323.2 269 66.9
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 6.5e-86 321.6 302 61.3
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 8.5e-86 321.2 267 67.8
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 2.5e-85 319.7 279 62.0
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 3.2e-85 319.3 270 64.1
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 9.4e-85 317.8 272 65.4
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 9.4e-85 317.8 267 63.7
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 3.6e-84 315.8 215 76.3
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 2.3e-83 313.2 320 57.2
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 2.3e-83 313.2 308 58.4
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 3.9e-83 312.4 303 60.7
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 9.7e-82 307.8 294 61.2
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 1.3e-81 307.4 274 63.5
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 4.8e-81 305.4 256 66.4
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 1.1e-80 304.3 270 63.3
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 1.8e-80 303.5 300 59.7
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 4.1e-80 302.4 314 57.3
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 5.3e-80 302.0 262 61.8
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 1.0e-78 297.7 264 63.6
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 3.8e-78 295.8 263 62.4
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 8.5e-78 294.7 337 54.3
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.6e-76 289.3 309 55.3
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 5.2e-75 285.4 212 73.1
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 5.2e-75 285.4 309 55.7
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 6.7e-75 285.0 310 56.1
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 1.2e-74 284.3 259 61.4
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 2.6e-74 283.1 272 59.2
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 1.3e-73 280.8 277 56.7
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 4.8e-73 278.9 299 57.2
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 1.1e-72 277.7 252 59.9
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 1.1e-72 277.7 293 56.0
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 4.1e-72 275.8 299 56.2
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 4.5e-71 272.3 227 63.9
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 1.0e-67 261.2 301 54.8
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 3.0e-67 259.6 225 65.3
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 6.8e-67 258.5 304 55.3
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 6.8e-67 258.5 272 55.5
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 8.8e-67 258.1 248 63.3
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 1.7e-62 243.8 277 52.7
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 2.3e-62 243.4 189 70.9
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 2.3e-62 243.4 239 61.9
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 6.1e-52 208.8 223 58.7
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 6.8e-51 205.3 316 45.9
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 1.5e-50 204.1 255 44.3
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 5.4e-48 195.7 146 68.5
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 3.0e-46 189.9 239 46.0
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 4.7e-44 182.6 205 57.1
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 9.8e-42 174.9 261 41.0
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 1.7e-38 164.1 135 64.4
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 4.7e-36 156.0 161 52.8
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 8.1e-36 155.2 153 63.4
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 5.2e-35 152.5 121 66.1
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 2.6e-34 150.2 120 67.5
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 9.9e-34 148.3 275 36.7
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 2.2e-33 147.1 120 66.7
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 1.2e-31 141.4 125 57.6
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 6.6e-30 135.6 148 54.7
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.3e-29 133.3 115 60.9
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 2.8e-28 130.2 120 55.8
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.6e-23 114.4 213 42.3
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 5.6e-21 105.9 232 36.2
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.2e-17 94.0 105 55.2
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 1.2e-15 88.2 118 50.8
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 3.9e-14 83.2 63 68.3
FAN18G1636 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.9e-08 64.3 51 64.7
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 1.2e-07 61.6 47 55.3
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.3e-06 58.2 105 40.0


User provided reference genes

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